Atomistry » Zinc » PDB 4x2u-4xdg » 4x2u
Atomistry »
  Zinc »
    PDB 4x2u-4xdg »
      4x2u »

Zinc in PDB 4x2u: X-Ray Crystal Structure of the Orally Available Aminopeptidase Inhibitor, Tosedostat, Bound to the M1 Alanyl Aminopeptidase From P. Falciparum

Protein crystallography data

The structure of X-Ray Crystal Structure of the Orally Available Aminopeptidase Inhibitor, Tosedostat, Bound to the M1 Alanyl Aminopeptidase From P. Falciparum, PDB code: 4x2u was solved by N.Drinkwater, S.Mcgowan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.10 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 75.472, 108.675, 118.428, 90.00, 90.00, 90.00
R / Rfree (%) 15.7 / 18.8

Other elements in 4x2u:

The structure of X-Ray Crystal Structure of the Orally Available Aminopeptidase Inhibitor, Tosedostat, Bound to the M1 Alanyl Aminopeptidase From P. Falciparum also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the X-Ray Crystal Structure of the Orally Available Aminopeptidase Inhibitor, Tosedostat, Bound to the M1 Alanyl Aminopeptidase From P. Falciparum (pdb code 4x2u). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the X-Ray Crystal Structure of the Orally Available Aminopeptidase Inhibitor, Tosedostat, Bound to the M1 Alanyl Aminopeptidase From P. Falciparum, PDB code: 4x2u:

Zinc binding site 1 out of 1 in 4x2u

Go back to Zinc Binding Sites List in 4x2u
Zinc binding site 1 out of 1 in the X-Ray Crystal Structure of the Orally Available Aminopeptidase Inhibitor, Tosedostat, Bound to the M1 Alanyl Aminopeptidase From P. Falciparum


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of X-Ray Crystal Structure of the Orally Available Aminopeptidase Inhibitor, Tosedostat, Bound to the M1 Alanyl Aminopeptidase From P. Falciparum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1101

b:14.0
occ:0.70
OE1 A:GLU519 2.0 12.4 1.0
O1 A:TOD1102 2.1 12.9 1.0
NE2 A:HIS496 2.1 10.8 1.0
NE2 A:HIS500 2.1 10.0 1.0
O2 A:TOD1102 2.2 14.5 1.0
OE2 A:GLU519 2.6 13.8 1.0
CD A:GLU519 2.6 12.1 1.0
C7 A:TOD1102 2.9 14.5 1.0
N1 A:TOD1102 3.0 13.4 1.0
CD2 A:HIS496 3.0 11.3 1.0
CE1 A:HIS500 3.1 12.1 1.0
CE1 A:HIS496 3.1 11.6 1.0
CD2 A:HIS500 3.1 9.8 1.0
O A:HOH1501 3.9 17.3 1.0
OH A:TYR580 4.0 12.1 1.0
CG A:GLU519 4.1 11.1 1.0
CG A:HIS496 4.2 9.2 1.0
ND1 A:HIS496 4.2 10.3 1.0
ND1 A:HIS500 4.2 13.6 1.0
CE2 A:TYR580 4.2 12.3 1.0
OE1 A:GLU463 4.2 13.2 1.0
CG A:HIS500 4.3 12.7 1.0
C6 A:TOD1102 4.3 14.8 1.0
O A:HOH1395 4.4 10.3 1.0
CZ A:TYR580 4.5 12.3 1.0
C4 A:TOD1102 4.5 13.0 1.0
OE1 A:GLU497 4.6 14.6 1.0
OE2 A:GLU463 4.7 15.7 1.0
NZ A:LYS518 4.7 13.8 1.0
CG2 A:THR522 4.7 11.3 1.0
CD A:GLU463 4.7 12.5 1.0
C5 A:TOD1102 4.8 12.1 1.0
CA A:GLU519 4.8 12.4 1.0
CB A:GLU519 4.8 10.9 1.0
OE2 A:GLU497 4.9 13.3 1.0
CB A:THR522 5.0 9.0 1.0
O3 A:TOD1102 5.0 15.9 1.0

Reference:

N.Drinkwater, R.S.Bamert, K.Kannan Sivaraman, A.Paiardini, S.Mcgowan. X-Ray Crystal Structures of An Orally Available Aminopeptidase Inhibitor, Tosedostat, Bound to Anti-Malarial Drug Targets Pfa-M1 and Pfa-M17. Proteins 2015.
ISSN: ESSN 1097-0134
PubMed: 25645579
DOI: 10.1002/PROT.24771
Page generated: Wed Dec 16 05:52:38 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy