Atomistry » Zinc » PDB 4r5v-4rl2 » 4r8m
Atomistry »
  Zinc »
    PDB 4r5v-4rl2 »
      4r8m »

Zinc in PDB 4r8m: Human SIRT2 Crystal Structure in Complex with Bhjh-TM1

Protein crystallography data

The structure of Human SIRT2 Crystal Structure in Complex with Bhjh-TM1, PDB code: 4r8m was solved by Y.B.Teng, Q.Hao, H.N.Lin, H.Jing, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.11 / 2.10
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 36.936, 116.799, 70.905, 90.00, 91.77, 90.00
R / Rfree (%) 22.1 / 27.3

Zinc Binding Sites:

The binding sites of Zinc atom in the Human SIRT2 Crystal Structure in Complex with Bhjh-TM1 (pdb code 4r8m). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Human SIRT2 Crystal Structure in Complex with Bhjh-TM1, PDB code: 4r8m:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 4r8m

Go back to Zinc Binding Sites List in 4r8m
Zinc binding site 1 out of 2 in the Human SIRT2 Crystal Structure in Complex with Bhjh-TM1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Human SIRT2 Crystal Structure in Complex with Bhjh-TM1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:47.2
occ:1.00
SG A:CYS221 2.2 43.5 1.0
SG A:CYS200 2.3 62.3 1.0
SG A:CYS195 2.4 50.9 1.0
SG A:CYS224 2.5 47.8 1.0
CB A:CYS221 3.0 43.9 1.0
CB A:CYS200 3.2 60.8 1.0
CB A:CYS195 3.2 45.4 1.0
CB A:CYS224 3.5 47.0 1.0
N A:CYS224 3.9 49.5 1.0
CA A:CYS224 4.2 46.5 1.0
OG A:SER197 4.4 49.3 1.0
CB A:HIS202 4.4 58.9 1.0
CA A:CYS221 4.5 45.8 1.0
CB A:ASP223 4.6 56.7 1.0
CA A:CYS200 4.6 61.8 1.0
CA A:CYS195 4.6 44.8 1.0
N A:HIS202 4.7 54.6 1.0
CB A:SER226 4.7 40.8 1.0
C A:CYS224 4.8 43.0 1.0
C A:CYS200 4.9 60.9 1.0
N A:ARG201 4.9 59.8 1.0
C A:ASP223 4.9 52.8 1.0
N A:GLN225 4.9 45.2 1.0
N A:SER226 5.0 40.5 1.0

Zinc binding site 2 out of 2 in 4r8m

Go back to Zinc Binding Sites List in 4r8m
Zinc binding site 2 out of 2 in the Human SIRT2 Crystal Structure in Complex with Bhjh-TM1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Human SIRT2 Crystal Structure in Complex with Bhjh-TM1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn401

b:38.8
occ:1.00
SG B:CYS200 2.3 41.3 1.0
SG B:CYS195 2.3 44.4 1.0
SG B:CYS221 2.3 35.0 1.0
SG B:CYS224 2.4 38.3 1.0
CB B:CYS200 3.0 42.2 1.0
CB B:CYS195 3.1 37.5 1.0
CB B:CYS221 3.2 37.1 1.0
CB B:CYS224 3.3 38.9 1.0
N B:CYS224 3.8 40.2 1.0
CA B:CYS224 4.1 38.9 1.0
CB B:HIS202 4.3 39.2 1.0
CA B:CYS200 4.4 43.7 1.0
N B:HIS202 4.5 37.7 1.0
CA B:CYS195 4.6 34.3 1.0
N B:ARG201 4.6 38.5 1.0
CB B:SER197 4.6 47.9 1.0
C B:CYS224 4.7 36.6 1.0
CA B:CYS221 4.7 38.0 1.0
CB B:ASP223 4.7 47.9 1.0
C B:CYS200 4.8 42.3 1.0
OG B:SER226 4.8 37.9 1.0
CB B:SER226 4.8 36.4 1.0
N B:GLN225 4.9 38.0 1.0
C B:ASP223 4.9 44.3 1.0
N B:SER226 5.0 36.2 1.0

Reference:

Y.B.Teng, H.Jing, P.Aramsangtienchai, B.He, S.Khan, J.Hu, H.Lin, Q.Hao. Efficient Demyristoylase Activity of SIRT2 Revealed By Kinetic and Structural Studies Sci Rep V. 5 8529 2015.
ISSN: ESSN 2045-2322
PubMed: 25704306
DOI: 10.1038/SREP08529
Page generated: Sun Oct 27 06:55:25 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy