Atomistry » Zinc » PDB 4ojp-4owf » 4ovz
Atomistry »
  Zinc »
    PDB 4ojp-4owf »
      4ovz »

Zinc in PDB 4ovz: X-Ray Structural and Biological Evaluation of A Series of Potent and Highly Selective Inhibitors of Human Coronavirus Papain-Like Proteases

Enzymatic activity of X-Ray Structural and Biological Evaluation of A Series of Potent and Highly Selective Inhibitors of Human Coronavirus Papain-Like Proteases

All present enzymatic activity of X-Ray Structural and Biological Evaluation of A Series of Potent and Highly Selective Inhibitors of Human Coronavirus Papain-Like Proteases:
3.4.19.12; 3.4.22.69;

Protein crystallography data

The structure of X-Ray Structural and Biological Evaluation of A Series of Potent and Highly Selective Inhibitors of Human Coronavirus Papain-Like Proteases, PDB code: 4ovz was solved by Y.M.Baez-Santos, A.Mesecar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.75 / 2.50
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 119.772, 73.508, 98.269, 90.00, 103.66, 90.00
R / Rfree (%) 18.2 / 24.3

Other elements in 4ovz:

The structure of X-Ray Structural and Biological Evaluation of A Series of Potent and Highly Selective Inhibitors of Human Coronavirus Papain-Like Proteases also contains other interesting chemical elements:

Fluorine (F) 2 atoms
Sodium (Na) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the X-Ray Structural and Biological Evaluation of A Series of Potent and Highly Selective Inhibitors of Human Coronavirus Papain-Like Proteases (pdb code 4ovz). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the X-Ray Structural and Biological Evaluation of A Series of Potent and Highly Selective Inhibitors of Human Coronavirus Papain-Like Proteases, PDB code: 4ovz:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 4ovz

Go back to Zinc Binding Sites List in 4ovz
Zinc binding site 1 out of 2 in the X-Ray Structural and Biological Evaluation of A Series of Potent and Highly Selective Inhibitors of Human Coronavirus Papain-Like Proteases


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of X-Ray Structural and Biological Evaluation of A Series of Potent and Highly Selective Inhibitors of Human Coronavirus Papain-Like Proteases within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn901

b:0.7
occ:1.00
HB3 A:CYS190 2.2 0.5 1.0
HG A:CYS193 2.2 0.3 1.0
HG A:CYS225 2.3 0.8 1.0
HG A:CYS227 2.4 0.0 1.0
SG A:CYS227 2.6 0.2 1.0
SG A:CYS190 2.6 95.1 1.0
CB A:CYS190 2.8 0.8 1.0
SG A:CYS225 2.8 0.8 1.0
SG A:CYS193 3.0 0.9 1.0
HB2 A:CYS190 3.2 0.5 1.0
HB2 A:CYS193 3.2 0.1 1.0
CB A:CYS193 3.6 0.4 1.0
HB2 A:ALA231 4.0 0.8 1.0
HB3 A:CYS193 4.0 0.1 1.0
H A:VAL226 4.0 0.4 1.0
HB3 A:CYS227 4.0 0.0 1.0
O A:HIS192 4.1 0.4 1.0
CB A:CYS227 4.1 0.3 1.0
CA A:CYS190 4.1 1.0 1.0
HA A:CYS190 4.3 0.9 1.0
CB A:CYS225 4.6 0.4 1.0
O A:ARG229 4.7 0.9 1.0
HB2 A:CYS227 4.7 0.0 1.0
C A:HIS192 4.7 0.1 1.0
HB3 A:HIS192 4.7 0.5 1.0
H A:HIS192 4.8 0.3 1.0
N A:CYS227 4.8 0.5 1.0
C A:CYS190 4.8 0.0 1.0
N A:VAL226 4.8 0.5 1.0
H A:CYS227 4.8 0.2 1.0
CB A:ALA231 4.9 99.0 1.0
HB2 A:CYS225 4.9 0.7 1.0
HB3 A:CYS225 4.9 0.7 1.0
O A:CYS190 4.9 0.2 1.0
C A:VAL226 5.0 0.7 1.0
CA A:CYS193 5.0 0.8 1.0
HB A:VAL226 5.0 0.6 1.0
HB1 A:ALA231 5.0 0.8 1.0

Zinc binding site 2 out of 2 in 4ovz

Go back to Zinc Binding Sites List in 4ovz
Zinc binding site 2 out of 2 in the X-Ray Structural and Biological Evaluation of A Series of Potent and Highly Selective Inhibitors of Human Coronavirus Papain-Like Proteases


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of X-Ray Structural and Biological Evaluation of A Series of Potent and Highly Selective Inhibitors of Human Coronavirus Papain-Like Proteases within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn901

b:0.1
occ:1.00
HG B:CYS225 2.1 0.9 1.0
HG B:CYS227 2.4 0.8 1.0
SG B:CYS227 2.6 1.0 1.0
SG B:CYS193 2.7 0.3 1.0
SG B:CYS190 2.9 96.8 1.0
SG B:CYS225 3.1 0.2 1.0
HB2 B:CYS193 3.4 0.1 1.0
CB B:CYS193 3.7 0.3 1.0
O B:ASP230 3.8 0.5 1.0
HB3 B:CYS227 3.9 0.2 1.0
HB3 B:CYS190 4.0 0.0 1.0
CB B:CYS227 4.0 0.7 1.0
HD1 B:HIS192 4.1 0.5 1.0
CB B:CYS190 4.2 94.2 1.0
HB3 B:CYS193 4.2 0.1 1.0
H B:CYS227 4.2 0.0 1.0
HB2 B:ALA231 4.3 92.1 1.0
H B:CYS193 4.3 0.1 1.0
HB2 B:CYS190 4.6 0.0 1.0
CB B:CYS225 4.6 0.3 1.0
HB2 B:CYS227 4.7 0.2 1.0
HB3 B:CYS225 4.7 0.3 1.0
HE1 B:HIS192 4.8 0.6 1.0
HA B:ALA231 4.8 83.9 1.0
ND1 B:HIS192 4.8 0.5 1.0
HB2 B:CYS225 4.9 0.3 1.0
N B:CYS227 4.9 0.2 1.0
C B:ASP230 4.9 98.3 1.0
N B:CYS193 5.0 0.7 1.0
CA B:CYS193 5.0 0.1 1.0

Reference:

Y.M.Baez-Santos, S.J.Barraza, M.W.Wilson, M.P.Agius, A.M.Mielech, N.M.Davis, S.C.Baker, S.D.Larsen, A.D.Mesecar. X-Ray Structural and Biological Evaluation of A Series of Potent and Highly Selective Inhibitors of Human Coronavirus Papain-Like Proteases. J.Med.Chem. V. 57 2393 2014.
ISSN: ISSN 1520-4804
PubMed: 24568342
DOI: 10.1021/JM401712T
Page generated: Sun Oct 27 04:00:52 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy