Atomistry » Zinc » PDB 4ngn-4ntk » 4npe
Atomistry »
  Zinc »
    PDB 4ngn-4ntk »
      4npe »

Zinc in PDB 4npe: High-Resolution Structure of C Domain of Staphylococcal Protein A at Room Temperature

Protein crystallography data

The structure of High-Resolution Structure of C Domain of Staphylococcal Protein A at Room Temperature, PDB code: 4npe was solved by L.N.Deis, C.W.Pemble Iv, T.G.Oas, J.S.Richardson, D.C.Richardson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.52 / 1.42
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 27.840, 38.560, 28.960, 90.00, 118.20, 90.00
R / Rfree (%) 11.1 / 14.3

Zinc Binding Sites:

The binding sites of Zinc atom in the High-Resolution Structure of C Domain of Staphylococcal Protein A at Room Temperature (pdb code 4npe). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the High-Resolution Structure of C Domain of Staphylococcal Protein A at Room Temperature, PDB code: 4npe:

Zinc binding site 1 out of 1 in 4npe

Go back to Zinc Binding Sites List in 4npe
Zinc binding site 1 out of 1 in the High-Resolution Structure of C Domain of Staphylococcal Protein A at Room Temperature


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of High-Resolution Structure of C Domain of Staphylococcal Protein A at Room Temperature within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn101

b:12.7
occ:1.00
OXT A:LYS58 1.9 19.1 0.3
N A:SCN102 1.9 18.4 1.0
OXT A:LYS58 1.9 14.6 0.7
C A:LYS58 2.7 19.7 0.3
O A:LYS58 2.8 20.2 0.3
C A:LYS58 2.8 14.4 0.7
O A:LYS58 3.0 15.1 0.7
C A:SCN102 3.0 17.9 1.0
HG3 A:LYS58 4.0 28.5 0.7
CA A:LYS58 4.1 20.5 0.3
O A:HOH246 4.2 35.7 1.0
CA A:LYS58 4.2 15.8 0.7
HA A:LYS58 4.3 20.5 0.3
HB2 A:LYS58 4.4 25.4 0.7
HA A:LYS58 4.4 20.5 0.7
HB2 A:LYS58 4.6 25.4 0.3
CB A:LYS58 4.7 23.1 0.7
S A:SCN102 4.7 21.7 1.0
HG3 A:LYS58 4.7 28.5 0.3
CG A:LYS58 4.8 28.0 0.7
CB A:LYS58 4.9 25.4 0.3
H A:LYS58 5.0 18.1 0.3

Reference:

L.N.Deis, C.W.Pemble, Y.Qi, A.Hagarman, D.C.Richardson, J.S.Richardson, T.G.Oas. Multiscale Conformational Heterogeneity in Staphylococcal Protein A: Possible Determinant of Functional Plasticity. Structure V. 22 1467 2014.
ISSN: ISSN 0969-2126
PubMed: 25295398
DOI: 10.1016/J.STR.2014.08.014
Page generated: Wed Dec 16 05:37:23 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy