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Zinc in PDB 5ce5: Probing the Roles of Two Tryptophans Surrounding the Unique Zinc Coordination Site in Lipase Family I.5

Enzymatic activity of Probing the Roles of Two Tryptophans Surrounding the Unique Zinc Coordination Site in Lipase Family I.5

All present enzymatic activity of Probing the Roles of Two Tryptophans Surrounding the Unique Zinc Coordination Site in Lipase Family I.5:
3.1.1.3;

Protein crystallography data

The structure of Probing the Roles of Two Tryptophans Surrounding the Unique Zinc Coordination Site in Lipase Family I.5, PDB code: 5ce5 was solved by O.U.Sezerman, A.D.Podjarny, T.Emel, A.Cousido-Siah, A.Mitschler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.28 / 2.00
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 73.305, 128.180, 127.963, 90.00, 90.00, 90.00
R / Rfree (%) 16.4 / 20.4

Other elements in 5ce5:

The structure of Probing the Roles of Two Tryptophans Surrounding the Unique Zinc Coordination Site in Lipase Family I.5 also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Probing the Roles of Two Tryptophans Surrounding the Unique Zinc Coordination Site in Lipase Family I.5 (pdb code 5ce5). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Probing the Roles of Two Tryptophans Surrounding the Unique Zinc Coordination Site in Lipase Family I.5, PDB code: 5ce5:

Zinc binding site 1 out of 1 in 5ce5

Go back to Zinc Binding Sites List in 5ce5
Zinc binding site 1 out of 1 in the Probing the Roles of Two Tryptophans Surrounding the Unique Zinc Coordination Site in Lipase Family I.5


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Probing the Roles of Two Tryptophans Surrounding the Unique Zinc Coordination Site in Lipase Family I.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn402

b:17.4
occ:1.00
 OD2 A:ASP239 1.9 17.2 1.0
NE2 A:HIS82 2.0 15.8 1.0
NE2 A:HIS88 2.1 15.0 1.0
OD1 A:ASP62 2.1 18.3 1.0
OD2 A:ASP62 2.5 18.9 1.0
CG A:ASP62 2.6 16.6 1.0
CG A:ASP239 2.8 17.4 1.0
CD2 A:HIS82 3.0 14.1 1.0
OD1 A:ASP239 3.0 16.4 1.0
CD2 A:HIS88 3.0 17.3 1.0
CE1 A:HIS82 3.1 17.2 1.0
CE1 A:HIS88 3.1 15.6 1.0
O A:HOH513 4.1 10.7 0.6
CG A:HIS82 4.1 17.7 1.0
OG A:SER59 4.1 13.3 1.0
ND1 A:HIS82 4.1 17.5 1.0
CB A:ASP62 4.2 14.4 1.0
CB A:ASP239 4.2 16.7 1.0
ND1 A:HIS88 4.2 18.1 1.0
CG A:HIS88 4.2 16.6 1.0
CD2 A:HIS86 4.7 21.4 1.0
O A:HOH659 4.8 21.3 1.0
CB A:HIS86 4.8 20.1 1.0
CA A:ASP62 4.9 14.2 1.0
CG A:HIS86 4.9 19.2 1.0
N A:ASP62 4.9 12.6 1.0
O A:ASP239 5.0 16.5 1.0

Reference:

E.Timucin, A.Cousido-Siah, A.Mitschler, A.Podjarny, O.U.Sezerman. Probing the Roles of Two Tryptophans Surrounding the Unique Zinc Coordination Site in Lipase Family I.5. Proteins V. 84 129 2016.
ISSN: ESSN 1097-0134
PubMed: 26573720
DOI: 10.1002/PROT.24961
Page generated: Thu Aug 21 01:25:05 2025

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