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Zinc in PDB 4n3v: Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added

Enzymatic activity of Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added

All present enzymatic activity of Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added:
4.2.1.106;

Protein crystallography data

The structure of Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added, PDB code: 4n3v was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.41 / 1.89
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 84.282, 84.282, 311.823, 90.00, 90.00, 120.00
R / Rfree (%) 18.8 / 21.8

Other elements in 4n3v:

The structure of Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added (pdb code 4n3v). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added, PDB code: 4n3v:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 4n3v

Go back to Zinc Binding Sites List in 4n3v
Zinc binding site 1 out of 2 in the Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:19.9
occ:0.33
 O A:HOH301 2.1 20.0 1.0
NE2 A:HIS86 2.2 21.2 1.0
CD2 A:HIS86 3.2 18.0 1.0
CE1 A:HIS86 3.2 19.5 1.0
OE1 A:GLU105 4.2 26.5 1.0
ND1 A:HIS86 4.3 19.9 1.0
CG A:HIS86 4.3 18.9 1.0
CB A:MET84 4.6 22.4 1.0
SD A:MET84 4.8 24.8 1.0
NA A:NA202 4.8 26.3 0.3

Zinc binding site 2 out of 2 in 4n3v

Go back to Zinc Binding Sites List in 4n3v
Zinc binding site 2 out of 2 in the Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn201

b:17.9
occ:0.33
 O B:HOH301 2.1 18.1 1.0
NE2 B:HIS86 2.2 18.0 1.0
CD2 B:HIS86 3.1 18.2 1.0
CE1 B:HIS86 3.2 17.6 1.0
OE1 B:GLU105 4.2 23.8 1.0
ND1 B:HIS86 4.3 18.0 1.0
CG B:HIS86 4.3 17.3 1.0
CB B:MET84 4.7 18.3 1.0
SD B:MET84 4.8 21.9 1.0
NA B:NA202 4.8 23.9 0.3

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Wed Dec 16 05:36:28 2020

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