Atomistry » Zinc » PDB 4n3v-4ngp » 4n3v
Atomistry »
  Zinc »
    PDB 4n3v-4ngp »
      4n3v »

Zinc in PDB 4n3v: Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added

Enzymatic activity of Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added

All present enzymatic activity of Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added:
4.2.1.106;

Protein crystallography data

The structure of Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added, PDB code: 4n3v was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.41 / 1.89
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 84.282, 84.282, 311.823, 90.00, 90.00, 120.00
R / Rfree (%) 18.8 / 21.8

Other elements in 4n3v:

The structure of Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added (pdb code 4n3v). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added, PDB code: 4n3v:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 4n3v

Go back to Zinc Binding Sites List in 4n3v
Zinc binding site 1 out of 2 in the Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:19.9
occ:0.33
 O A:HOH301 2.1 20.0 1.0
NE2 A:HIS86 2.2 21.2 1.0
CD2 A:HIS86 3.2 18.0 1.0
CE1 A:HIS86 3.2 19.5 1.0
OE1 A:GLU105 4.2 26.5 1.0
ND1 A:HIS86 4.3 19.9 1.0
CG A:HIS86 4.3 18.9 1.0
CB A:MET84 4.6 22.4 1.0
SD A:MET84 4.8 24.8 1.0
NA A:NA202 4.8 26.3 0.3

Zinc binding site 2 out of 2 in 4n3v

Go back to Zinc Binding Sites List in 4n3v
Zinc binding site 2 out of 2 in the Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn201

b:17.9
occ:0.33
 O B:HOH301 2.1 18.1 1.0
NE2 B:HIS86 2.2 18.0 1.0
CD2 B:HIS86 3.1 18.2 1.0
CE1 B:HIS86 3.2 17.6 1.0
OE1 B:GLU105 4.2 23.8 1.0
ND1 B:HIS86 4.3 18.0 1.0
CG B:HIS86 4.3 17.3 1.0
CB B:MET84 4.7 18.3 1.0
SD B:MET84 4.8 21.9 1.0
NA B:NA202 4.8 23.9 0.3

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sun Oct 27 02:59:50 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy