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Zinc in PDB 4myq: Selective Inhibition of the Catalytic Domain of Human Phosphodiesterase 4B with A-33

Enzymatic activity of Selective Inhibition of the Catalytic Domain of Human Phosphodiesterase 4B with A-33

All present enzymatic activity of Selective Inhibition of the Catalytic Domain of Human Phosphodiesterase 4B with A-33:
3.1.4.17;

Protein crystallography data

The structure of Selective Inhibition of the Catalytic Domain of Human Phosphodiesterase 4B with A-33, PDB code: 4myq was solved by D.Fox Iii, T.E.Edwards, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.85 / 1.90
Space group P 42
Cell size a, b, c (Å), α, β, γ (°) 99.700, 99.700, 47.020, 90.00, 90.00, 90.00
R / Rfree (%) 18.8 / 22.2

Other elements in 4myq:

The structure of Selective Inhibition of the Catalytic Domain of Human Phosphodiesterase 4B with A-33 also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Chlorine (Cl) 1 atom
Sodium (Na) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Selective Inhibition of the Catalytic Domain of Human Phosphodiesterase 4B with A-33 (pdb code 4myq). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Selective Inhibition of the Catalytic Domain of Human Phosphodiesterase 4B with A-33, PDB code: 4myq:

Zinc binding site 1 out of 1 in 4myq

Go back to Zinc Binding Sites List in 4myq
Zinc binding site 1 out of 1 in the Selective Inhibition of the Catalytic Domain of Human Phosphodiesterase 4B with A-33


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Selective Inhibition of the Catalytic Domain of Human Phosphodiesterase 4B with A-33 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn703

b:10.3
occ:1.00
 NE2 A:HIS446 2.0 5.6 1.0
NE2 A:HIS410 2.0 6.0 1.0
O A:HOH969 2.1 10.7 1.0
OD2 A:ASP447 2.1 6.3 1.0
OD1 A:ASP564 2.2 6.9 1.0
CD2 A:HIS446 2.9 5.7 1.0
CD2 A:HIS410 3.0 6.0 1.0
CE1 A:HIS446 3.1 5.7 1.0
CG A:ASP564 3.1 7.1 1.0
CE1 A:HIS410 3.1 6.1 1.0
CG A:ASP447 3.1 6.3 1.0
O A:HOH822 3.3 9.6 1.0
OD2 A:ASP564 3.3 7.4 1.0
OD1 A:ASP447 3.6 6.4 1.0
MG A:MG702 4.0 9.3 1.0
CG A:HIS446 4.1 5.6 1.0
ND1 A:HIS446 4.1 5.6 1.0
CG A:HIS410 4.2 6.1 1.0
ND1 A:HIS410 4.2 6.0 1.0
CD2 A:HIS406 4.2 7.4 1.0
CB A:ASP447 4.3 6.2 1.0
CB A:ASP564 4.5 7.0 1.0
CG2 A:VAL414 4.5 5.3 1.0
NE2 A:HIS406 4.5 7.5 1.0
O A:HOH950 4.6 17.3 1.0
O A:HOH817 4.7 6.4 1.0
O A:HOH808 4.8 8.6 1.0
CA A:ASP564 5.0 6.8 1.0

Reference:

D.Fox, A.B.Burgin, M.E.Gurney. Structural Basis For the Design of Selective Phosphodiesterase 4B Inhibitors. Cell Signal V. 26 657 2014.
PubMed: 24361374
DOI: 10.1016/J.CELLSIG.2013.12.003
Page generated: Wed Dec 16 05:36:12 2020

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