Zinc in PDB 4mb7: Crystal Structure of A Viral Dna Glycosylase

All present enzymatic activity of Crystal Structure of A Viral Dna Glycosylase:
3.2.2.23; 4.2.99.18;

The structure of Crystal Structure of A Viral Dna Glycosylase, PDB code: 4mb7 was solved by A.Prakash, B.E.Eckenroth, S.Doublie, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.70 / 2.04
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	121.670, 121.670, 164.180, 90.00, 90.00, 120.00
R / Rfree (%)	18.5 / 22.5

The binding sites of Zinc atom in the Crystal Structure of A Viral Dna Glycosylase (pdb code 4mb7). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of A Viral Dna Glycosylase, PDB code: 4mb7:

Zinc binding site 1 out of 1 in the Crystal Structure of A Viral Dna Glycosylase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Viral Dna Glycosylase within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:37.2 occ:1.00 ND1 A:HIS252 2.0 37.1 1.0 SG A:CYS248 2.2 46.2 1.0 SG A:CYS269 2.3 38.2 1.0 SG A:CYS272 2.3 43.5 1.0 CG A:HIS252 2.9 43.9 1.0 CE1 A:HIS252 3.0 59.3 1.0 CB A:CYS248 3.2 59.2 1.0 CB A:HIS252 3.2 41.8 1.0 CB A:CYS269 3.4 37.8 1.0 CB A:CYS272 3.5 34.3 1.0 N A:CYS272 3.9 41.9 1.0 CD2 A:HIS252 4.1 52.8 1.0 NE2 A:HIS252 4.1 42.3 1.0 CA A:CYS272 4.3 44.0 1.0 CB A:LEU250 4.3 54.0 1.0 N A:HIS252 4.3 43.7 1.0 CA A:HIS252 4.4 44.7 1.0 OH A:TYR191 4.5 45.1 1.0 CE1 A:TYR191 4.5 48.1 1.0 CB A:VAL271 4.6 49.6 1.0 CA A:CYS248 4.7 41.7 1.0 CD1 A:LEU250 4.8 53.5 1.0 CA A:CYS269 4.8 37.5 1.0 CG A:LEU250 4.9 52.9 1.0 C A:VAL271 5.0 54.0 1.0

A.Prakash, B.E.Eckenroth, A.M.Averill, K.Imamura, S.S.Wallace, S.Doublie. Structural Investigation of A Viral Ortholog of Human NEIL2/3 Dna Glycosylases. Dna Repair V. 12 1062 2013.
ISSN: ISSN 1568-7864
PubMed: 24120312
DOI: 10.1016/J.DNAREP.2013.09.004