Atomistry » Zinc » PDB 4lep-4llg » 4lf8
Atomistry »
  Zinc »
    PDB 4lep-4llg »
      4lf8 »

Zinc in PDB 4lf8: Crystal Structure of 30S Ribosomal Subunit From Thermus Thermophilus

Protein crystallography data

The structure of Crystal Structure of 30S Ribosomal Subunit From Thermus Thermophilus, PDB code: 4lf8 was solved by H.Demirci, R.Belardinelli, J.Carr, F.Murphy Iv, G.Jogl, A.E.Dahlberg, S.T.Gregory, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.62 / 3.15
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 402.445, 402.445, 176.924, 90.00, 90.00, 90.00
R / Rfree (%) 16.8 / 20.5

Other elements in 4lf8:

The structure of Crystal Structure of 30S Ribosomal Subunit From Thermus Thermophilus also contains other interesting chemical elements:

Magnesium (Mg) 202 atoms
Potassium (K) 20 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of 30S Ribosomal Subunit From Thermus Thermophilus (pdb code 4lf8). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of 30S Ribosomal Subunit From Thermus Thermophilus, PDB code: 4lf8:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 4lf8

Go back to Zinc Binding Sites List in 4lf8
Zinc binding site 1 out of 2 in the Crystal Structure of 30S Ribosomal Subunit From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of 30S Ribosomal Subunit From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn301

b:99.0
occ:1.00
SG D:CYS31 2.3 0.4 1.0
SG D:CYS26 2.3 0.1 1.0
SG D:CYS9 2.4 93.6 1.0
SG D:CYS12 2.4 97.6 1.0
CB D:CYS12 3.7 0.9 1.0
O D:CYS31 3.8 0.2 1.0
CB D:CYS26 3.8 0.9 1.0
CB D:CYS31 3.9 0.9 1.0
CB D:CYS9 3.9 87.1 1.0
CA D:CYS26 4.4 0.6 1.0
CA D:CYS9 4.4 0.6 1.0
CA D:CYS31 4.4 0.8 1.0
C D:CYS31 4.5 0.7 1.0
O D:LEU19 4.6 0.2 1.0

Zinc binding site 2 out of 2 in 4lf8

Go back to Zinc Binding Sites List in 4lf8
Zinc binding site 2 out of 2 in the Crystal Structure of 30S Ribosomal Subunit From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of 30S Ribosomal Subunit From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Zn101

b:0.6
occ:1.00
SG N:CYS27 2.3 82.8 1.0
SG N:CYS43 2.3 93.3 1.0
SG N:CYS24 2.3 0.6 1.0
SG N:CYS40 2.3 0.6 1.0
CB N:CYS43 3.1 82.2 1.0
CB N:CYS24 3.2 0.8 1.0
CB N:CYS40 3.3 92.5 1.0
CB N:CYS27 3.3 0.1 1.0
N N:CYS27 3.8 0.5 1.0
N N:CYS40 3.8 92.3 1.0
N N:CYS43 4.0 79.2 1.0
CA N:CYS40 4.1 92.5 1.0
CA N:CYS27 4.1 0.5 1.0
CA N:CYS43 4.2 83.8 1.0
CB N:ARG26 4.6 97.3 1.0
CB N:ARG29 4.6 86.1 1.0
C N:CYS40 4.7 98.2 1.0
CA N:CYS24 4.7 0.3 1.0
N N:GLY28 4.8 0.9 1.0
C N:CYS27 4.8 0.2 1.0
O N:CYS40 4.8 0.6 1.0
C N:ARG26 4.9 0.9 1.0
N N:ARG29 4.9 0.2 1.0
C N:LEU39 5.0 88.3 1.0

Reference:

H.Demirci, R.Belardinelli, J.Carr, F.Murphy Iv, G.Jogl, A.E.Dahlberg, S.T.Gregory. Crystal Structure of 30S Ribosomal Subunit From Thermus Thermophilus To Be Published 2013.
Page generated: Wed Dec 16 05:32:34 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy