Zinc in PDB 4kmb: Complex of 4'-Sulfo-Lewis-X with A Selectin-Like Mutant of Mannose-Binding Protein A

The structure of Complex of 4'-Sulfo-Lewis-X with A Selectin-Like Mutant of Mannose-Binding Protein A, PDB code: 4kmb was solved by K.K.-S.Ng, W.I.Weis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.00 / 2.00
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	79.100, 85.000, 97.500, 90.00, 106.30, 90.00
R / Rfree (%)	20.8 / 27.2

The structure of Complex of 4'-Sulfo-Lewis-X with A Selectin-Like Mutant of Mannose-Binding Protein A also contains other interesting chemical elements:

Chlorine	(Cl)	3 atoms
Calcium	(Ca)	11 atoms

The binding sites of Zinc atom in the Complex of 4'-Sulfo-Lewis-X with A Selectin-Like Mutant of Mannose-Binding Protein A (pdb code 4kmb). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Complex of 4'-Sulfo-Lewis-X with A Selectin-Like Mutant of Mannose-Binding Protein A, PDB code: 4kmb:

Zinc binding site 1 out of 1 in the Complex of 4'-Sulfo-Lewis-X with A Selectin-Like Mutant of Mannose-Binding Protein A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Complex of 4'-Sulfo-Lewis-X with A Selectin-Like Mutant of Mannose-Binding Protein A within 5.0Å range: probe atom residue distance (Å) B Occ 1:Zn7 b:22.2 occ:0.60 ND1 3:HIS99 1.9 16.6 1.0 ND1 2:HIS99 2.3 13.5 1.0 ND1 1:HIS99 2.3 16.9 1.0 O 3:HOH285 2.4 7.7 1.0 CE1 3:HIS99 2.7 16.8 1.0 CG 3:HIS99 3.0 18.4 1.0 CE1 1:HIS99 3.1 13.4 1.0 CG 2:HIS99 3.1 13.9 1.0 CE1 2:HIS99 3.1 12.3 1.0 CG 1:HIS99 3.3 16.2 1.0 CB 2:HIS99 3.5 11.0 1.0 CB 3:HIS99 3.5 13.8 1.0 CB 1:HIS99 3.7 14.2 1.0 NE2 3:HIS99 3.8 16.6 1.0 O 3:HOH286 3.8 13.7 1.0 O 2:HOH272 3.9 7.5 1.0 CD2 3:HIS99 4.0 17.7 1.0 O 1:HOH225 4.0 16.4 1.0 NE2 2:HIS99 4.1 16.5 1.0 CA 2:HIS99 4.1 9.6 1.0 CD2 2:HIS99 4.1 15.9 1.0 NE2 1:HIS99 4.2 18.6 1.0 CD2 1:HIS99 4.3 18.2 1.0 CA 3:HIS99 4.3 13.4 1.0 CA 1:HIS99 4.5 11.9 1.0

K.K.Ng, W.I.Weis. Structure of A Selectin-Like Mutant of Mannose-Binding Protein Complexed with Sialylated and Sulfated Lewis(X) Oligosaccharides. Biochemistry V. 36 979 1997.
ISSN: ISSN 0006-2960
PubMed: 9033386
DOI: 10.1021/BI962564E