Zinc in PDB 4kfs: Structure of the Genome Packaging Ntpase B204 From Sulfolobus Turreted Icosahedral Virus 2 in Complex with Amp

The structure of Structure of the Genome Packaging Ntpase B204 From Sulfolobus Turreted Icosahedral Virus 2 in Complex with Amp, PDB code: 4kfs was solved by L.J.Happonen, E.Oksanen, T.Kajander, A.Goldman, S.Butcher, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.29 / 1.95
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	46.600, 61.015, 70.004, 90.00, 96.57, 90.00
R / Rfree (%)	19.7 / 23.8

The structure of Structure of the Genome Packaging Ntpase B204 From Sulfolobus Turreted Icosahedral Virus 2 in Complex with Amp also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Zinc atom in the Structure of the Genome Packaging Ntpase B204 From Sulfolobus Turreted Icosahedral Virus 2 in Complex with Amp (pdb code 4kfs). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of the Genome Packaging Ntpase B204 From Sulfolobus Turreted Icosahedral Virus 2 in Complex with Amp, PDB code: 4kfs:

Zinc binding site 1 out of 1 in the Structure of the Genome Packaging Ntpase B204 From Sulfolobus Turreted Icosahedral Virus 2 in Complex with Amp


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Genome Packaging Ntpase B204 From Sulfolobus Turreted Icosahedral Virus 2 in Complex with Amp within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn302 b:31.6 occ:0.32 OD2 A:ASP73 2.0 46.7 1.0 OD2 A:ASP39 2.1 32.2 1.0 NE2 A:HIS41 2.2 37.4 1.0 NE2 A:HIS108 2.3 32.6 1.0 OD1 A:ASP39 2.3 30.4 1.0 CG A:ASP39 2.5 31.0 1.0 CG A:ASP73 2.9 41.1 1.0 CE1 A:HIS41 3.0 36.1 1.0 CE1 A:HIS108 3.1 34.4 1.0 CD2 A:HIS41 3.2 39.2 1.0 CB A:ASP73 3.3 35.7 1.0 CD2 A:HIS108 3.4 31.9 1.0 OD1 A:ASP73 3.9 39.1 1.0 CB A:ASP39 4.1 25.4 1.0 ND1 A:HIS41 4.1 36.6 1.0 CE1 A:PHE80 4.2 36.3 1.0 CG A:HIS41 4.3 39.6 1.0 ND1 A:HIS108 4.3 30.3 1.0 CD1 A:PHE80 4.3 37.8 1.0 CG A:HIS108 4.4 29.1 1.0 CD2 A:LEU84 4.6 22.6 1.0 CA A:ASP73 4.8 37.0 1.0 CA A:ASP39 4.9 20.8 1.0 C A:ASP39 4.9 29.7 1.0 O A:ASP39 5.0 26.7 1.0 CG2 A:ILE102 5.0 22.5 1.0

L.J.Happonen, E.Oksanen, L.Liljeroos, A.Goldman, T.Kajander, S.J.Butcher. The Structure of the Ntpase That Powers Dna Packaging Into Sulfolobus Turreted Icosahedral Virus 2. J.Virol. V. 87 8388 2013.
ISSN: ISSN 0022-538X
PubMed: 23698307
DOI: 10.1128/JVI.00831-13