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Zinc in PDB 4kfs: Structure of the Genome Packaging Ntpase B204 From Sulfolobus Turreted Icosahedral Virus 2 in Complex with Amp

Protein crystallography data

The structure of Structure of the Genome Packaging Ntpase B204 From Sulfolobus Turreted Icosahedral Virus 2 in Complex with Amp, PDB code: 4kfs was solved by L.J.Happonen, E.Oksanen, T.Kajander, A.Goldman, S.Butcher, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.29 / 1.95
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 46.600, 61.015, 70.004, 90.00, 96.57, 90.00
R / Rfree (%) 19.7 / 23.8

Other elements in 4kfs:

The structure of Structure of the Genome Packaging Ntpase B204 From Sulfolobus Turreted Icosahedral Virus 2 in Complex with Amp also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of the Genome Packaging Ntpase B204 From Sulfolobus Turreted Icosahedral Virus 2 in Complex with Amp (pdb code 4kfs). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of the Genome Packaging Ntpase B204 From Sulfolobus Turreted Icosahedral Virus 2 in Complex with Amp, PDB code: 4kfs:

Zinc binding site 1 out of 1 in 4kfs

Go back to Zinc Binding Sites List in 4kfs
Zinc binding site 1 out of 1 in the Structure of the Genome Packaging Ntpase B204 From Sulfolobus Turreted Icosahedral Virus 2 in Complex with Amp


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Genome Packaging Ntpase B204 From Sulfolobus Turreted Icosahedral Virus 2 in Complex with Amp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn302

b:31.6
occ:0.32
OD2 A:ASP73 2.0 46.7 1.0
OD2 A:ASP39 2.1 32.2 1.0
NE2 A:HIS41 2.2 37.4 1.0
NE2 A:HIS108 2.3 32.6 1.0
OD1 A:ASP39 2.3 30.4 1.0
CG A:ASP39 2.5 31.0 1.0
CG A:ASP73 2.9 41.1 1.0
CE1 A:HIS41 3.0 36.1 1.0
CE1 A:HIS108 3.1 34.4 1.0
CD2 A:HIS41 3.2 39.2 1.0
CB A:ASP73 3.3 35.7 1.0
CD2 A:HIS108 3.4 31.9 1.0
OD1 A:ASP73 3.9 39.1 1.0
CB A:ASP39 4.1 25.4 1.0
ND1 A:HIS41 4.1 36.6 1.0
CE1 A:PHE80 4.2 36.3 1.0
CG A:HIS41 4.3 39.6 1.0
ND1 A:HIS108 4.3 30.3 1.0
CD1 A:PHE80 4.3 37.8 1.0
CG A:HIS108 4.4 29.1 1.0
CD2 A:LEU84 4.6 22.6 1.0
CA A:ASP73 4.8 37.0 1.0
CA A:ASP39 4.9 20.8 1.0
C A:ASP39 4.9 29.7 1.0
O A:ASP39 5.0 26.7 1.0
CG2 A:ILE102 5.0 22.5 1.0

Reference:

L.J.Happonen, E.Oksanen, L.Liljeroos, A.Goldman, T.Kajander, S.J.Butcher. The Structure of the Ntpase That Powers Dna Packaging Into Sulfolobus Turreted Icosahedral Virus 2. J.Virol. V. 87 8388 2013.
ISSN: ISSN 0022-538X
PubMed: 23698307
DOI: 10.1128/JVI.00831-13
Page generated: Wed Dec 16 05:29:08 2020

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