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Zinc in PDB 4kav: Crystal Structure of the Soluble Domain of Lipooligosaccharide Phosphoethanolamine Transferase A From Neisseria Meningitidis

Enzymatic activity of Crystal Structure of the Soluble Domain of Lipooligosaccharide Phosphoethanolamine Transferase A From Neisseria Meningitidis

All present enzymatic activity of Crystal Structure of the Soluble Domain of Lipooligosaccharide Phosphoethanolamine Transferase A From Neisseria Meningitidis:
3.1.3.27;

Protein crystallography data

The structure of Crystal Structure of the Soluble Domain of Lipooligosaccharide Phosphoethanolamine Transferase A From Neisseria Meningitidis, PDB code: 4kav was solved by A.Vrielink, C.Wanty, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.26 / 1.43
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 43.696, 44.923, 50.179, 70.26, 69.36, 61.13
R / Rfree (%) 11.6 / 15.7

Other elements in 4kav:

The structure of Crystal Structure of the Soluble Domain of Lipooligosaccharide Phosphoethanolamine Transferase A From Neisseria Meningitidis also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Copper (Cu) 1 atom
Sodium (Na) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Soluble Domain of Lipooligosaccharide Phosphoethanolamine Transferase A From Neisseria Meningitidis (pdb code 4kav). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the Soluble Domain of Lipooligosaccharide Phosphoethanolamine Transferase A From Neisseria Meningitidis, PDB code: 4kav:

Zinc binding site 1 out of 1 in 4kav

Go back to Zinc Binding Sites List in 4kav
Zinc binding site 1 out of 1 in the Crystal Structure of the Soluble Domain of Lipooligosaccharide Phosphoethanolamine Transferase A From Neisseria Meningitidis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Soluble Domain of Lipooligosaccharide Phosphoethanolamine Transferase A From Neisseria Meningitidis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn601

b:5.2
occ:1.00
 O1 A:PO4603 1.8 6.5 0.5
OE1 A:GLU240 2.0 5.1 1.0
OD2 A:ASP452 2.0 4.8 1.0
NE2 A:HIS453 2.1 4.2 1.0
O2P A:TPO280 2.3 9.8 0.5
OG1 A:TPO280 2.3 6.7 0.5
HG22 A:TPO280 2.4 8.5 0.5
OE2 A:GLU240 2.5 5.3 1.0
CD A:GLU240 2.6 3.1 1.0
P A:TPO280 2.8 10.2 0.5
CG A:ASP452 2.9 4.3 1.0
CD2 A:HIS453 2.9 3.9 1.0
CE1 A:HIS453 3.0 3.9 1.0
OD1 A:ASP452 3.0 3.8 1.0
HD2 A:HIS453 3.1 4.7 1.0
P A:PO4603 3.2 8.0 0.5
HG23 A:TPO280 3.2 8.5 0.5
H A:TPO280 3.2 9.1 0.5
HE1 A:HIS453 3.3 4.7 1.0
CG2 A:TPO280 3.3 7.1 0.5
O3 A:PO4603 3.6 9.3 0.5
CB A:TPO280 3.6 5.5 0.5
HG22 A:TPO280 3.6 3.8 0.5
HG1 A:THR241 3.6 6.8 1.0
N A:TPO280 3.7 7.6 0.5
H A:TPO280 3.7 10.7 0.5
O3P A:TPO280 3.7 9.2 0.5
HE2 A:HIS465 3.8 12.1 1.0
HA A:TPO280 3.8 8.5 0.5
N A:TPO280 3.8 8.9 0.5
HA A:SER279 3.9 12.9 1.0
H A:THR241 3.9 2.7 1.0
HG21 A:TPO280 3.9 8.5 0.5
HA A:GLU240 3.9 4.0 1.0
O4 A:PO4603 4.0 9.5 0.5
CA A:TPO280 4.0 7.1 0.5
ND1 A:HIS453 4.0 3.0 1.0
CG A:HIS453 4.1 3.1 1.0
CG2 A:TPO280 4.1 3.1 0.5
NE2 A:HIS465 4.1 10.1 1.0
CG A:GLU240 4.1 2.9 1.0
O1P A:TPO280 4.2 11.2 0.5
O A:HOH709 4.2 5.9 1.0
HA A:TPO280 4.2 8.7 0.5
OG1 A:THR241 4.2 5.7 1.0
CB A:ASP452 4.2 4.2 1.0
CA A:TPO280 4.3 7.2 0.5
HG21 A:TPO280 4.3 3.8 0.5
CB A:TPO280 4.3 6.2 0.5
O2 A:PO4603 4.3 8.7 0.5
HB2 A:ASP452 4.3 5.0 1.0
C A:SER279 4.4 8.7 1.0
HB A:TPO280 4.4 6.7 0.5
HG3 A:GLU240 4.4 3.5 1.0
HD2 A:HIS383 4.4 17.8 1.0
N A:THR241 4.5 2.2 1.0
HE2 A:HIS383 4.6 18.3 1.0
CE1 A:HIS465 4.6 9.3 1.0
HG2 A:GLU240 4.6 3.5 1.0
CD2 A:HIS465 4.6 8.3 1.0
CA A:SER279 4.6 10.8 1.0
HB3 A:ASP452 4.6 5.0 1.0
CA A:GLU240 4.7 3.4 1.0
HE1 A:HIS465 4.7 11.2 1.0
HD2 A:HIS465 4.8 10.0 1.0
HD1 A:HIS453 4.8 3.5 1.0
CB A:GLU240 4.8 3.9 1.0
CD2 A:HIS383 4.9 14.8 1.0
HA A:THR241 4.9 2.4 1.0
HB2 A:GLU240 4.9 4.7 1.0
NE2 A:HIS383 4.9 15.3 1.0

Reference:

C.Wanty, A.Anandan, S.Piek, J.Walshe, J.Ganguly, R.W.Carlson, K.A.Stubbs, C.M.Kahler, A.Vrielink. The Structure of the Neisserial Lipooligosaccharide Phosphoethanolamine Transferase A (Lpta) Required For Resistance to Polymyxin. J.Mol.Biol. V. 425 3389 2013.
ISSN: ISSN 0022-2836
PubMed: 23810904
DOI: 10.1016/J.JMB.2013.06.029
Page generated: Sun Oct 27 01:05:10 2024

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