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Zinc in PDB 4ik2: G215S, A251G, T257A, D260G, T262D Mutant of Carboxypeptidase T From Thermoactinomyces Vulgaris with N-Boc-L-Leu

Enzymatic activity of G215S, A251G, T257A, D260G, T262D Mutant of Carboxypeptidase T From Thermoactinomyces Vulgaris with N-Boc-L-Leu

All present enzymatic activity of G215S, A251G, T257A, D260G, T262D Mutant of Carboxypeptidase T From Thermoactinomyces Vulgaris with N-Boc-L-Leu:
3.4.17.18;

Protein crystallography data

The structure of G215S, A251G, T257A, D260G, T262D Mutant of Carboxypeptidase T From Thermoactinomyces Vulgaris with N-Boc-L-Leu, PDB code: 4ik2 was solved by V.I.Timofeev, S.A.Kuznetsov, V.K.Akparov, I.P.Kuranova, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 12.00 / 1.40
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 158.243, 158.243, 104.657, 90.00, 90.00, 120.00
R / Rfree (%) 12.5 / 13.6

Other elements in 4ik2:

The structure of G215S, A251G, T257A, D260G, T262D Mutant of Carboxypeptidase T From Thermoactinomyces Vulgaris with N-Boc-L-Leu also contains other interesting chemical elements:

Calcium (Ca) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the G215S, A251G, T257A, D260G, T262D Mutant of Carboxypeptidase T From Thermoactinomyces Vulgaris with N-Boc-L-Leu (pdb code 4ik2). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the G215S, A251G, T257A, D260G, T262D Mutant of Carboxypeptidase T From Thermoactinomyces Vulgaris with N-Boc-L-Leu, PDB code: 4ik2:

Zinc binding site 1 out of 1 in 4ik2

Go back to Zinc Binding Sites List in 4ik2
Zinc binding site 1 out of 1 in the G215S, A251G, T257A, D260G, T262D Mutant of Carboxypeptidase T From Thermoactinomyces Vulgaris with N-Boc-L-Leu


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of G215S, A251G, T257A, D260G, T262D Mutant of Carboxypeptidase T From Thermoactinomyces Vulgaris with N-Boc-L-Leu within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn402

b:8.0
occ:1.00
ND1 A:HIS204 2.1 7.2 1.0
ND1 A:HIS69 2.1 7.7 1.0
OE2 A:GLU72 2.1 9.2 1.0
O A:BL2403 2.1 11.1 1.0
OXT A:BL2403 2.5 11.4 1.0
OE1 A:GLU72 2.5 8.4 1.0
C A:BL2403 2.6 12.1 1.0
CD A:GLU72 2.6 8.4 1.0
CE1 A:HIS69 3.0 8.1 1.0
CE1 A:HIS204 3.0 7.4 1.0
CG A:HIS204 3.2 6.7 1.0
CG A:HIS69 3.2 7.8 1.0
CB A:HIS204 3.5 6.3 1.0
CB A:HIS69 3.6 7.8 1.0
CA A:BL2403 4.0 13.2 1.0
O A:HOH519 4.1 10.6 1.0
O A:THR205 4.1 7.4 1.0
NE2 A:HIS204 4.1 7.7 1.0
O A:HOH539 4.1 10.8 1.0
NE2 A:HIS69 4.1 8.0 1.0
CG A:GLU72 4.1 8.1 1.0
NH1 A:ARG129 4.2 9.3 1.0
O4 A:SO4401 4.2 23.5 1.0
CD2 A:HIS204 4.2 7.2 1.0
CD2 A:HIS69 4.3 8.1 1.0
O1 A:SO4401 4.4 17.5 1.0
CA A:HIS204 4.4 6.8 1.0
OE2 A:GLU277 4.7 14.9 1.0
S A:SO4401 4.7 29.4 1.0
N A:THR205 4.7 6.8 1.0
N A:BL2403 4.8 12.3 1.0
CA A:HIS69 4.9 7.8 1.0
N A:HIS69 4.9 8.1 1.0
O2 A:SO4401 4.9 19.1 1.0

Reference:

V.I.Timofeev, S.A.Kuznetsov, V.K.Akparov, I.P.Kuranova. G215S, A251G, T257A, D260G, T262D Mutant of Carboxypeptidase T From Thermoactinomyces Vulgaris with N-Boc-L-Leu To Be Published.
Page generated: Wed Dec 16 05:24:14 2020

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