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Zinc in PDB 4ign: 2.32 Angstrom X-Ray Crystal Structure of R47A Mutant of Human Acmsd

Enzymatic activity of 2.32 Angstrom X-Ray Crystal Structure of R47A Mutant of Human Acmsd

All present enzymatic activity of 2.32 Angstrom X-Ray Crystal Structure of R47A Mutant of Human Acmsd:
4.1.1.45;

Protein crystallography data

The structure of 2.32 Angstrom X-Ray Crystal Structure of R47A Mutant of Human Acmsd, PDB code: 4ign was solved by F.Liu, A.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.33
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 89.142, 101.686, 232.613, 90.00, 90.00, 90.00
R / Rfree (%) 20.8 / 27.6

Zinc Binding Sites:

The binding sites of Zinc atom in the 2.32 Angstrom X-Ray Crystal Structure of R47A Mutant of Human Acmsd (pdb code 4ign). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the 2.32 Angstrom X-Ray Crystal Structure of R47A Mutant of Human Acmsd, PDB code: 4ign:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in 4ign

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Zinc binding site 1 out of 6 in the 2.32 Angstrom X-Ray Crystal Structure of R47A Mutant of Human Acmsd


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of 2.32 Angstrom X-Ray Crystal Structure of R47A Mutant of Human Acmsd within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:19.4
occ:1.00
 O A:HOH638 2.0 36.1 1.0
NE2 A:HIS174 2.1 18.0 1.0
OD1 A:ASP291 2.1 30.9 1.0
NE2 A:HIS6 2.1 11.4 1.0
CE1 A:HIS8 2.3 18.1 1.0
CG A:ASP291 2.9 28.6 1.0
CE1 A:HIS174 3.0 17.4 1.0
OD2 A:ASP291 3.1 33.0 1.0
CE1 A:HIS6 3.1 12.5 1.0
CD2 A:HIS174 3.1 17.9 1.0
CD2 A:HIS6 3.1 12.6 1.0
ND1 A:HIS8 3.2 18.5 1.0
NE2 A:HIS8 3.3 21.2 1.0
ND1 A:HIS174 4.1 17.6 1.0
CG A:HIS174 4.2 17.9 1.0
ND1 A:HIS6 4.2 12.6 1.0
CG A:HIS6 4.3 12.6 1.0
CB A:ASP291 4.3 24.6 1.0
CG A:HIS8 4.4 18.8 1.0
CD2 A:HIS8 4.4 18.5 1.0
CE1 A:HIS224 4.6 19.5 1.0
CA A:ASP291 4.6 20.7 1.0
NE2 A:HIS224 4.8 18.9 1.0
CG A:PRO77 4.9 19.2 1.0

Zinc binding site 2 out of 6 in 4ign

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Zinc binding site 2 out of 6 in the 2.32 Angstrom X-Ray Crystal Structure of R47A Mutant of Human Acmsd


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of 2.32 Angstrom X-Ray Crystal Structure of R47A Mutant of Human Acmsd within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn401

b:19.8
occ:1.00
 NE2 B:HIS174 2.0 15.4 1.0
NE2 B:HIS8 2.1 16.3 1.0
OD1 B:ASP291 2.1 27.9 1.0
NE2 B:HIS6 2.2 15.1 1.0
O B:HOH666 2.3 31.5 1.0
CG B:ASP291 2.9 28.1 1.0
CE1 B:HIS174 3.0 14.3 1.0
CD2 B:HIS174 3.0 16.3 1.0
CE1 B:HIS8 3.0 15.7 1.0
OD2 B:ASP291 3.0 36.5 1.0
CD2 B:HIS8 3.0 15.2 1.0
CD2 B:HIS6 3.2 15.6 1.0
CE1 B:HIS6 3.2 14.6 1.0
ND1 B:HIS174 4.1 15.1 1.0
CG B:HIS174 4.2 15.4 1.0
ND1 B:HIS8 4.2 16.7 1.0
CG B:HIS8 4.2 16.3 1.0
CB B:ASP291 4.3 23.5 1.0
ND1 B:HIS6 4.3 16.6 1.0
CG B:HIS6 4.3 17.1 1.0
CE1 B:HIS224 4.5 20.1 1.0
CA B:ASP291 4.6 19.7 1.0
CG B:PRO77 4.8 16.3 1.0
CD1 B:PHE294 4.9 34.8 1.0
NE2 B:HIS224 4.9 20.8 1.0

Zinc binding site 3 out of 6 in 4ign

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Zinc binding site 3 out of 6 in the 2.32 Angstrom X-Ray Crystal Structure of R47A Mutant of Human Acmsd


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of 2.32 Angstrom X-Ray Crystal Structure of R47A Mutant of Human Acmsd within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn401

b:22.0
occ:1.00
 NE2 C:HIS174 1.9 18.0 1.0
NE2 C:HIS6 2.1 17.1 1.0
OD1 C:ASP291 2.1 38.4 1.0
NE2 C:HIS8 2.2 23.2 1.0
O C:HOH647 2.3 34.8 1.0
CE1 C:HIS174 2.9 16.0 1.0
CD2 C:HIS174 3.0 16.7 1.0
CD2 C:HIS8 3.0 22.1 1.0
CG C:ASP291 3.0 32.6 1.0
CD2 C:HIS6 3.1 16.9 1.0
CE1 C:HIS6 3.1 17.2 1.0
OD2 C:ASP291 3.3 45.5 1.0
CE1 C:HIS8 3.4 23.6 1.0
ND1 C:HIS174 4.1 17.1 1.0
CG C:HIS174 4.1 16.4 1.0
ND1 C:HIS6 4.2 17.6 1.0
CG C:HIS6 4.2 17.7 1.0
CB C:ASP291 4.3 28.5 1.0
CG C:HIS8 4.3 23.6 1.0
ND1 C:HIS8 4.4 25.9 1.0
CE1 C:HIS224 4.5 18.4 1.0
CA C:ASP291 4.5 25.3 1.0
NE2 C:HIS224 4.8 17.9 1.0
CG C:PRO77 4.8 18.8 1.0
CD C:PRO77 4.9 19.0 1.0

Zinc binding site 4 out of 6 in 4ign

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Zinc binding site 4 out of 6 in the 2.32 Angstrom X-Ray Crystal Structure of R47A Mutant of Human Acmsd


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of 2.32 Angstrom X-Ray Crystal Structure of R47A Mutant of Human Acmsd within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn401

b:25.1
occ:1.00
 NE2 D:HIS174 2.0 19.3 1.0
CE1 D:HIS8 2.2 17.5 1.0
NE2 D:HIS6 2.2 18.0 1.0
OD1 D:ASP291 2.2 30.0 1.0
O D:HOH644 2.8 31.2 1.0
CD2 D:HIS174 2.9 19.2 1.0
CG D:ASP291 2.9 28.9 1.0
OD2 D:ASP291 3.0 36.9 1.0
NE2 D:HIS8 3.1 18.0 1.0
CE1 D:HIS6 3.1 18.6 1.0
CE1 D:HIS174 3.1 17.4 1.0
CD2 D:HIS6 3.2 16.8 1.0
ND1 D:HIS8 3.2 16.5 1.0
CG D:HIS174 4.2 18.8 1.0
ND1 D:HIS174 4.2 18.5 1.0
ND1 D:HIS6 4.2 19.3 1.0
CB D:ASP291 4.3 26.8 1.0
CG D:HIS6 4.3 18.0 1.0
CD2 D:HIS8 4.3 17.1 1.0
CG D:HIS8 4.3 16.6 1.0
CE1 D:HIS224 4.6 20.3 1.0
CA D:ASP291 4.6 24.3 1.0
CG D:PRO77 4.9 16.2 1.0
NE2 D:HIS224 5.0 19.5 1.0

Zinc binding site 5 out of 6 in 4ign

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Zinc binding site 5 out of 6 in the 2.32 Angstrom X-Ray Crystal Structure of R47A Mutant of Human Acmsd


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of 2.32 Angstrom X-Ray Crystal Structure of R47A Mutant of Human Acmsd within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn401

b:26.1
occ:1.00
 NE2 E:HIS174 2.0 21.9 1.0
OD1 E:ASP291 2.1 41.0 1.0
NE2 E:HIS6 2.2 25.5 1.0
NE2 E:HIS8 2.3 21.1 1.0
O E:HOH627 2.6 33.1 1.0
CE1 E:HIS174 2.9 21.3 1.0
CD2 E:HIS174 3.1 22.4 1.0
CD2 E:HIS8 3.1 20.9 1.0
CE1 E:HIS6 3.1 27.2 1.0
CD2 E:HIS6 3.2 25.8 1.0
CG E:ASP291 3.2 39.0 1.0
CE1 E:HIS8 3.3 20.4 1.0
OD2 E:ASP291 3.7 46.4 1.0
ND1 E:HIS174 4.0 22.1 1.0
CG E:HIS174 4.2 22.3 1.0
ND1 E:HIS6 4.3 26.1 1.0
CG E:HIS8 4.3 21.5 1.0
CG E:HIS6 4.3 26.5 1.0
ND1 E:HIS8 4.4 21.8 1.0
CB E:ASP291 4.4 30.2 1.0
CE1 E:HIS224 4.6 25.3 1.0
CA E:ASP291 4.6 27.0 1.0
CG E:PRO77 4.8 26.2 1.0
CD E:PRO77 4.9 28.0 1.0
NE2 E:HIS224 5.0 25.3 1.0

Zinc binding site 6 out of 6 in 4ign

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Zinc binding site 6 out of 6 in the 2.32 Angstrom X-Ray Crystal Structure of R47A Mutant of Human Acmsd


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of 2.32 Angstrom X-Ray Crystal Structure of R47A Mutant of Human Acmsd within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn401

b:29.1
occ:1.00
 OD1 F:ASP291 1.8 36.3 1.0
NE2 F:HIS6 2.0 21.0 1.0
NE2 F:HIS8 2.0 23.4 1.0
NE2 F:HIS174 2.1 24.8 1.0
O F:HOH582 2.2 30.0 1.0
CE1 F:HIS6 2.9 22.4 1.0
CE1 F:HIS8 2.9 25.3 1.0
CD2 F:HIS6 3.0 22.3 1.0
CD2 F:HIS8 3.0 21.9 1.0
CG F:ASP291 3.0 36.8 1.0
CE1 F:HIS174 3.0 23.1 1.0
CD2 F:HIS174 3.1 24.1 1.0
OD2 F:ASP291 3.6 45.7 1.0
ND1 F:HIS6 4.0 21.0 1.0
ND1 F:HIS8 4.1 25.4 1.0
CG F:HIS6 4.1 21.9 1.0
CG F:HIS8 4.1 24.0 1.0
ND1 F:HIS174 4.2 24.5 1.0
CB F:ASP291 4.2 31.3 1.0
CG F:HIS174 4.3 25.1 1.0
CA F:ASP291 4.6 29.3 1.0
CE1 F:HIS224 4.7 25.4 1.0
CG F:PRO77 4.7 32.9 1.0
NE2 F:HIS224 4.9 26.9 1.0

Reference:

F.Liu, A.Liu. 2.32 Angstrom X-Ray Crystal Structure of R47A Mutant of Human Acmsd To Be Published.
Page generated: Sun Oct 27 00:44:19 2024

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