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Zinc in PDB 4ie7: Crystal Structure of the Human Fat Mass and Obesity Associated Protein (Fto) in Complex with Citrate and Rhein (Rhn)

Protein crystallography data

The structure of Crystal Structure of the Human Fat Mass and Obesity Associated Protein (Fto) in Complex with Citrate and Rhein (Rhn), PDB code: 4ie7 was solved by W.S.Aik, M.A.Mcdonough, C.J.Schofield, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.86 / 2.60
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 141.624, 141.624, 85.599, 90.00, 90.00, 120.00
R / Rfree (%) 17.4 / 21.8

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Human Fat Mass and Obesity Associated Protein (Fto) in Complex with Citrate and Rhein (Rhn) (pdb code 4ie7). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the Human Fat Mass and Obesity Associated Protein (Fto) in Complex with Citrate and Rhein (Rhn), PDB code: 4ie7:

Zinc binding site 1 out of 1 in 4ie7

Go back to Zinc Binding Sites List in 4ie7
Zinc binding site 1 out of 1 in the Crystal Structure of the Human Fat Mass and Obesity Associated Protein (Fto) in Complex with Citrate and Rhein (Rhn)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Human Fat Mass and Obesity Associated Protein (Fto) in Complex with Citrate and Rhein (Rhn) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn601

b:62.4
occ:1.00
NE2 A:HIS231 2.0 54.5 1.0
OD1 A:ASP233 2.0 65.7 1.0
NE2 A:HIS307 2.1 54.4 1.0
OB2 A:FLC603 2.1 65.8 1.0
OB1 A:FLC603 2.4 62.0 1.0
CBC A:FLC603 2.6 66.5 1.0
CG A:ASP233 2.8 56.7 1.0
CE1 A:HIS307 2.9 52.3 1.0
CE1 A:HIS231 2.9 54.8 1.0
OD2 A:ASP233 3.0 51.0 1.0
CD2 A:HIS231 3.1 57.8 1.0
CD2 A:HIS307 3.2 51.6 1.0
ND1 A:HIS231 4.0 55.5 1.0
ND1 A:HIS307 4.1 47.3 1.0
OAE A:RHN602 4.1 62.5 1.0
CB A:FLC603 4.1 72.2 1.0
NH2 A:ARG322 4.1 72.4 1.0
CG A:HIS231 4.1 56.0 1.0
CB A:ASP233 4.2 53.6 1.0
CG A:HIS307 4.3 46.8 1.0
OAC A:RHN602 4.3 74.3 1.0
CAN A:RHN602 4.4 63.1 1.0
CA A:ASP233 4.5 51.5 1.0
N A:ASP233 4.5 49.7 1.0
CAQ A:RHN602 4.6 72.4 1.0
CAT A:RHN602 4.6 67.2 1.0
OHB A:FLC603 4.7 74.2 1.0
NH1 A:ARG322 4.8 67.6 1.0
CA A:FLC603 4.8 67.7 1.0
CG A:FLC603 4.9 78.0 1.0
CGC A:FLC603 4.9 78.0 1.0
CZ A:ARG322 4.9 67.6 1.0
CAH A:RHN602 5.0 59.5 1.0

Reference:

W.S.Aik, M.Demetriades, M.K.K.Hamdan, E.A.L.Bagg, K.K.Yeoh, C.Lejeune, Z.Zhang, M.A.Mcdonough, C.J.Schofield. Structural Basis For Inhibition of the Fat Mass and Obesity Associated Protein (Fto) J.Med.Chem. V. 56 3680 2013.
ISSN: ISSN 0022-2623
PubMed: 23547775
DOI: 10.1021/JM400193D
Page generated: Sun Oct 27 00:42:44 2024

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