Zinc in PDB 4h2x: Crystal Structure of Engineered Bradyrhizobium Japonicum Glycine:[Carrier Protein] Ligase Complexed with Carrier Protein From Agrobacterium Tumefaciens and An Analogue of Glycyl Adenylate

The structure of Crystal Structure of Engineered Bradyrhizobium Japonicum Glycine:[Carrier Protein] Ligase Complexed with Carrier Protein From Agrobacterium Tumefaciens and An Analogue of Glycyl Adenylate, PDB code: 4h2x was solved by M.Luic, I.Weygand-Durasevic, N.Ivic, M.Mocibob, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.94 / 2.15
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	99.575, 101.433, 103.044, 90.00, 90.00, 90.00
R / Rfree (%)	16.7 / 19.8

The structure of Crystal Structure of Engineered Bradyrhizobium Japonicum Glycine:[Carrier Protein] Ligase Complexed with Carrier Protein From Agrobacterium Tumefaciens and An Analogue of Glycyl Adenylate also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Zinc atom in the Crystal Structure of Engineered Bradyrhizobium Japonicum Glycine:[Carrier Protein] Ligase Complexed with Carrier Protein From Agrobacterium Tumefaciens and An Analogue of Glycyl Adenylate (pdb code 4h2x). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Engineered Bradyrhizobium Japonicum Glycine:[Carrier Protein] Ligase Complexed with Carrier Protein From Agrobacterium Tumefaciens and An Analogue of Glycyl Adenylate, PDB code: 4h2x:

Zinc binding site 1 out of 1 in the Crystal Structure of Engineered Bradyrhizobium Japonicum Glycine:[Carrier Protein] Ligase Complexed with Carrier Protein From Agrobacterium Tumefaciens and An Analogue of Glycyl Adenylate


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Engineered Bradyrhizobium Japonicum Glycine:[Carrier Protein] Ligase Complexed with Carrier Protein From Agrobacterium Tumefaciens and An Analogue of Glycyl Adenylate within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn401 b:38.7 occ:0.29 OE1 B:GLU176 1.9 47.9 1.0 N B:G5A402 2.2 42.3 0.9 SG B:CYS279 2.5 35.5 1.0 SG B:CYS131 2.7 44.0 1.0 CD B:GLU176 2.8 34.7 1.0 CA B:G5A402 3.0 36.1 0.9 CB B:CYS131 3.0 24.9 1.0 OE2 B:GLU176 3.1 38.5 1.0 CB B:CYS279 3.4 23.0 1.0 S44 C:PNS101 4.0 73.0 1.0 CG B:GLU176 4.2 28.1 1.0 CA B:CYS131 4.2 25.4 1.0 N B:CYS131 4.3 21.1 1.0 C B:G5A402 4.4 51.4 0.9 OH B:TYR135 4.6 43.2 1.0 C43 C:PNS101 4.7 63.0 1.0 CB B:GLU176 4.7 21.3 1.0 CE1 B:HIS257 4.7 24.9 1.0 CA B:CYS279 4.9 26.5 1.0 NE2 B:HIS257 4.9 29.1 1.0 O B:G5A402 4.9 41.2 0.9 ND2 B:ASN255 5.0 32.7 1.0

M.Mocibob, N.Ivic, M.Luic, I.Weygand-Durasevic. Adaptation of Aminoacyl-Trna Synthetase Catalytic Core to Carrier Protein Aminoacylation. Structure V. 21 614 2013.
ISSN: ISSN 0969-2126
PubMed: 23541895
DOI: 10.1016/J.STR.2013.02.017