Zinc in PDB 4h2v: Crystal Structure of Bradyrhizobium Japonicum Glycine:[Carrier Protein] Ligase Complexed with Glycylated Carrier Protein

The structure of Crystal Structure of Bradyrhizobium Japonicum Glycine:[Carrier Protein] Ligase Complexed with Glycylated Carrier Protein, PDB code: 4h2v was solved by M.Luic, I.Weygand-Durasevic, N.Ivic, M.Mocibob, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.38 / 2.00
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	90.853, 101.020, 104.407, 90.00, 90.00, 90.00
R / Rfree (%)	17.9 / 21

The binding sites of Zinc atom in the Crystal Structure of Bradyrhizobium Japonicum Glycine:[Carrier Protein] Ligase Complexed with Glycylated Carrier Protein (pdb code 4h2v). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Bradyrhizobium Japonicum Glycine:[Carrier Protein] Ligase Complexed with Glycylated Carrier Protein, PDB code: 4h2v:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Bradyrhizobium Japonicum Glycine:[Carrier Protein] Ligase Complexed with Glycylated Carrier Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Bradyrhizobium Japonicum Glycine:[Carrier Protein] Ligase Complexed with Glycylated Carrier Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:20.6 occ:0.75 OE1 A:GLU176 1.9 27.9 1.0 C12 C:H2V101 2.2 34.7 1.0 SG A:CYS131 2.3 22.9 1.0 SG A:CYS279 2.5 24.3 1.0 CD A:GLU176 2.9 18.8 1.0 N2 C:H2V101 3.1 45.3 1.0 CB A:CYS131 3.1 13.8 1.0 OE2 A:GLU176 3.2 19.2 1.0 CB A:CYS279 3.3 19.1 1.0 C11 C:H2V101 3.4 49.5 1.0 O7 C:H2V101 4.0 36.7 1.0 CG A:GLU176 4.2 15.0 1.0 CA A:CYS131 4.3 16.8 1.0 N A:CYS131 4.3 16.4 1.0 S C:H2V101 4.3 63.7 1.0 OH A:TYR135 4.4 25.7 1.0 NE2 A:HIS257 4.6 25.4 1.0 CE1 A:HIS257 4.7 22.1 1.0 CB A:GLU176 4.7 16.4 1.0 CA A:CYS279 4.8 18.6 1.0 ND2 A:ASN255 4.9 20.9 1.0 CG2 A:VAL178 4.9 16.8 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Bradyrhizobium Japonicum Glycine:[Carrier Protein] Ligase Complexed with Glycylated Carrier Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Bradyrhizobium Japonicum Glycine:[Carrier Protein] Ligase Complexed with Glycylated Carrier Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn401 b:21.8 occ:0.76 OE1 B:GLU176 1.9 28.0 1.0 SG B:CYS131 2.3 23.0 1.0 SG B:CYS279 2.5 24.8 1.0 O B:HOH645 2.5 43.0 1.0 CD B:GLU176 2.8 18.9 1.0 OE2 B:GLU176 3.0 17.8 1.0 CB B:CYS131 3.1 16.8 1.0 CB B:CYS279 3.3 17.6 1.0 S44 D:PNS1000 4.1 63.5 1.0 CG B:GLU176 4.2 16.4 1.0 N B:CYS131 4.3 15.2 1.0 CA B:CYS131 4.3 15.4 1.0 OH B:TYR135 4.4 24.0 1.0 C43 D:PNS1000 4.4 59.1 1.0 CB B:GLU176 4.6 13.7 1.0 NE2 B:HIS257 4.6 22.0 1.0 CE1 B:HIS257 4.7 22.2 1.0 CA B:CYS279 4.8 16.2 1.0

M.Mocibob, N.Ivic, M.Luic, I.Weygand-Durasevic. Adaptation of Aminoacyl-Trna Synthetase Catalytic Core to Carrier Protein Aminoacylation. Structure V. 21 614 2013.
ISSN: ISSN 0969-2126
PubMed: 23541895
DOI: 10.1016/J.STR.2013.02.017