Zinc in PDB 4h2s: Crystal Structure of Bradyrhizobium Japonicum Glycine:[Carrier Protein] Ligase Complexed with Cognate Carrier Protein and Amp

The structure of Crystal Structure of Bradyrhizobium Japonicum Glycine:[Carrier Protein] Ligase Complexed with Cognate Carrier Protein and Amp, PDB code: 4h2s was solved by M.Luic, I.Weygand-Durasevic, N.Ivic, M.Mocibob, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.29 / 2.15
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	92.046, 101.677, 103.981, 90.00, 90.00, 90.00
R / Rfree (%)	17.1 / 20.6

The binding sites of Zinc atom in the Crystal Structure of Bradyrhizobium Japonicum Glycine:[Carrier Protein] Ligase Complexed with Cognate Carrier Protein and Amp (pdb code 4h2s). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Bradyrhizobium Japonicum Glycine:[Carrier Protein] Ligase Complexed with Cognate Carrier Protein and Amp, PDB code: 4h2s:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Bradyrhizobium Japonicum Glycine:[Carrier Protein] Ligase Complexed with Cognate Carrier Protein and Amp


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Bradyrhizobium Japonicum Glycine:[Carrier Protein] Ligase Complexed with Cognate Carrier Protein and Amp within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1000 b:20.3 occ:0.64 OE1 A:GLU176 1.8 27.9 1.0 O A:HOH1297 2.2 42.1 1.0 SG A:CYS131 2.4 24.4 1.0 SG A:CYS279 2.5 26.7 1.0 CD A:GLU176 2.8 15.9 1.0 CB A:CYS131 3.1 17.2 1.0 OE2 A:GLU176 3.2 22.4 1.0 CB A:CYS279 3.4 16.9 1.0 S44 C:PNS1000 3.8 67.1 1.0 C43 C:PNS1000 4.0 46.4 1.0 CG A:GLU176 4.1 13.1 1.0 CA A:CYS131 4.3 22.3 1.0 N A:CYS131 4.4 12.8 1.0 OH A:TYR135 4.5 32.8 1.0 C42 C:PNS1000 4.5 46.1 1.0 CB A:GLU176 4.6 10.2 1.0 NE2 A:HIS257 4.7 25.6 1.0 CE1 A:HIS257 4.7 21.5 1.0 CA A:CYS279 4.9 18.2 1.0 CG2 A:VAL178 4.9 15.7 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Bradyrhizobium Japonicum Glycine:[Carrier Protein] Ligase Complexed with Cognate Carrier Protein and Amp


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Bradyrhizobium Japonicum Glycine:[Carrier Protein] Ligase Complexed with Cognate Carrier Protein and Amp within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn401 b:26.0 occ:0.68 OE1 B:GLU176 1.9 24.0 1.0 SG B:CYS131 2.4 25.0 1.0 SG B:CYS279 2.5 22.8 1.0 O B:HOH700 2.7 33.0 1.0 CD B:GLU176 2.8 18.8 1.0 OE2 B:GLU176 3.1 22.8 1.0 CB B:CYS131 3.2 17.8 1.0 CB B:CYS279 3.4 16.1 1.0 S44 D:PNS1000 3.8 67.5 1.0 CG B:GLU176 4.2 12.4 1.0 N B:CYS131 4.3 15.9 1.0 C43 D:PNS1000 4.4 65.9 1.0 CA B:CYS131 4.4 17.8 1.0 OH B:TYR135 4.5 19.2 1.0 CB B:GLU176 4.6 10.6 1.0 CE1 B:HIS257 4.6 22.0 1.0 NE2 B:HIS257 4.7 22.9 1.0 C42 D:PNS1000 4.8 57.1 1.0 CA B:CYS279 4.9 16.5 1.0 ND2 B:ASN255 5.0 18.5 1.0 CG2 B:VAL178 5.0 14.0 1.0

M.Mocibob, N.Ivic, M.Luic, I.Weygand-Durasevic. Adaptation of Aminoacyl-Trna Synthetase Catalytic Core to Carrier Protein Aminoacylation. Structure V. 21 614 2013.
ISSN: ISSN 0969-2126
PubMed: 23541895
DOI: 10.1016/J.STR.2013.02.017