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Zinc in PDB 4gxw: Crystal Structure of A COG1816 Amidohydrolase (Target Efi-505188) From Burkhoderia Ambifaria, with Bound Zn

Enzymatic activity of Crystal Structure of A COG1816 Amidohydrolase (Target Efi-505188) From Burkhoderia Ambifaria, with Bound Zn

All present enzymatic activity of Crystal Structure of A COG1816 Amidohydrolase (Target Efi-505188) From Burkhoderia Ambifaria, with Bound Zn:
3.5.4.4;

Protein crystallography data

The structure of Crystal Structure of A COG1816 Amidohydrolase (Target Efi-505188) From Burkhoderia Ambifaria, with Bound Zn, PDB code: 4gxw was solved by M.W.Vetting, A.M.Goble, L.L.Morisco, S.R.Wasserman, S.Sojitra, H.J.Imker, F.M.Raushel, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (Efi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.26 / 1.30
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 73.058, 66.223, 75.432, 90.00, 93.64, 90.00
R / Rfree (%) 16 / 18.1

Other elements in 4gxw:

The structure of Crystal Structure of A COG1816 Amidohydrolase (Target Efi-505188) From Burkhoderia Ambifaria, with Bound Zn also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of A COG1816 Amidohydrolase (Target Efi-505188) From Burkhoderia Ambifaria, with Bound Zn (pdb code 4gxw). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of A COG1816 Amidohydrolase (Target Efi-505188) From Burkhoderia Ambifaria, with Bound Zn, PDB code: 4gxw:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 4gxw

Go back to Zinc Binding Sites List in 4gxw
Zinc binding site 1 out of 2 in the Crystal Structure of A COG1816 Amidohydrolase (Target Efi-505188) From Burkhoderia Ambifaria, with Bound Zn


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A COG1816 Amidohydrolase (Target Efi-505188) From Burkhoderia Ambifaria, with Bound Zn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:10.6
occ:0.72
 O A:HOH1048 2.0 13.7 1.0
NE2 A:HIS36 2.1 12.9 1.0
NE2 A:HIS34 2.2 9.1 1.0
OD1 A:ASP300 2.2 13.7 1.0
NE2 A:HIS215 2.3 8.7 1.0
CD2 A:HIS36 3.0 11.4 1.0
CG A:ASP300 3.1 15.0 1.0
CD2 A:HIS34 3.1 9.5 1.0
CE1 A:HIS36 3.1 12.0 1.0
CE1 A:HIS215 3.2 9.4 1.0
CE1 A:HIS34 3.2 8.6 1.0
CD2 A:HIS215 3.3 9.0 1.0
OD2 A:ASP300 3.3 18.0 1.0
NE2 A:HIS240 3.9 9.3 1.0
O A:HOH797 4.0 30.6 1.0
CG A:HIS36 4.2 10.4 1.0
ND1 A:HIS36 4.2 12.2 1.0
ND1 A:HIS34 4.3 8.8 1.0
CG A:HIS34 4.3 7.9 1.0
ND1 A:HIS215 4.3 7.9 1.0
O A:HOH755 4.4 28.3 1.0
O A:HOH648 4.4 22.8 1.0
CG A:HIS215 4.4 8.9 1.0
CB A:ASP300 4.5 10.5 1.0
O A:HOH801 4.6 35.1 1.0
CE1 A:HIS240 4.6 9.5 1.0
CE2 A:PHE115 4.7 9.6 1.0
CD2 A:PHE115 4.8 10.2 1.0
CD2 A:HIS240 4.8 11.1 1.0

Zinc binding site 2 out of 2 in 4gxw

Go back to Zinc Binding Sites List in 4gxw
Zinc binding site 2 out of 2 in the Crystal Structure of A COG1816 Amidohydrolase (Target Efi-505188) From Burkhoderia Ambifaria, with Bound Zn


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A COG1816 Amidohydrolase (Target Efi-505188) From Burkhoderia Ambifaria, with Bound Zn within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn401

b:8.5
occ:0.73
 O B:HOH526 2.0 10.6 1.0
NE2 B:HIS36 2.1 9.6 1.0
NE2 B:HIS34 2.1 7.8 1.0
OD1 B:ASP300 2.2 10.7 1.0
NE2 B:HIS215 2.2 7.5 1.0
CD2 B:HIS36 3.0 9.9 1.0
CD2 B:HIS34 3.1 8.5 1.0
CG B:ASP300 3.1 9.1 1.0
CE1 B:HIS36 3.1 8.6 1.0
CE1 B:HIS215 3.2 8.0 1.0
CE1 B:HIS34 3.2 7.8 1.0
CD2 B:HIS215 3.3 7.5 1.0
OD2 B:ASP300 3.3 12.8 1.0
NE2 B:HIS240 3.9 9.4 1.0
O B:HOH822 4.1 25.8 1.0
CG B:HIS36 4.2 10.1 1.0
ND1 B:HIS36 4.2 9.8 1.0
O B:HOH1155 4.2 24.6 1.0
ND1 B:HIS34 4.3 7.6 1.0
CG B:HIS34 4.3 6.7 1.0
ND1 B:HIS215 4.3 7.2 1.0
CG B:HIS215 4.4 8.3 1.0
O B:HOH711 4.4 19.8 1.0
CB B:ASP300 4.5 8.9 1.0
O B:HOH755 4.6 23.9 1.0
CE1 B:HIS240 4.6 7.5 1.0
CE2 B:PHE115 4.7 8.7 1.0
CD2 B:HIS240 4.8 8.3 1.0
CD2 B:PHE115 4.8 8.6 1.0
CA B:ASP300 4.9 7.9 1.0

Reference:

M.W.Vetting, A.M.Goble, L.L.Morisco, S.R.Wasserman, S.Sojitra, H.J.Imker, F.M.Raushel, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (Efi). Crystal Structure of A COG1816 Amidohydrolase (Target Efi-505188) From Burkhoderia Ambifaria, with Bound Zn To Be Published.
Page generated: Sat Oct 26 23:43:12 2024

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