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Zinc in PDB 4gv9: Lassa Nucleoprotein C-Terminal Domain in Complex with Triphosphated Dsrna Soaking For 5 Min

Protein crystallography data

The structure of Lassa Nucleoprotein C-Terminal Domain in Complex with Triphosphated Dsrna Soaking For 5 Min, PDB code: 4gv9 was solved by X.Jiang, Q.Huang, W.Wang, H.Dong, H.Ly, Y.Liang, C.Dong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.89 / 2.46
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 44.780, 44.780, 221.740, 90.00, 90.00, 90.00
R / Rfree (%) 25.9 / 30.5

Other elements in 4gv9:

The structure of Lassa Nucleoprotein C-Terminal Domain in Complex with Triphosphated Dsrna Soaking For 5 Min also contains other interesting chemical elements:

Manganese (Mn) 3 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Lassa Nucleoprotein C-Terminal Domain in Complex with Triphosphated Dsrna Soaking For 5 Min (pdb code 4gv9). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Lassa Nucleoprotein C-Terminal Domain in Complex with Triphosphated Dsrna Soaking For 5 Min, PDB code: 4gv9:

Zinc binding site 1 out of 1 in 4gv9

Go back to Zinc Binding Sites List in 4gv9
Zinc binding site 1 out of 1 in the Lassa Nucleoprotein C-Terminal Domain in Complex with Triphosphated Dsrna Soaking For 5 Min


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Lassa Nucleoprotein C-Terminal Domain in Complex with Triphosphated Dsrna Soaking For 5 Min within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn601

b:57.1
occ:1.00
OE2 A:GLU399 2.1 52.7 1.0
SG A:CYS529 2.1 51.5 1.0
SG A:CYS506 2.2 54.1 1.0
NE2 A:HIS509 2.2 58.7 1.0
CD2 A:HIS509 3.0 59.9 1.0
CD A:GLU399 3.0 52.4 1.0
CB A:CYS506 3.3 54.7 1.0
CB A:CYS529 3.3 52.3 1.0
OE1 A:GLU399 3.3 54.3 1.0
CE1 A:HIS509 3.3 59.1 1.0
NE2 A:HIS412 3.7 42.5 1.0
CA A:CYS529 3.9 52.0 1.0
CE1 A:HIS412 4.0 42.6 1.0
CG A:HIS509 4.2 60.9 1.0
ND1 A:HIS509 4.3 60.4 1.0
CG A:GLU399 4.4 49.6 1.0
N A:ALA530 4.4 49.5 1.0
CE2 A:PHE414 4.5 44.7 1.0
C A:CYS529 4.6 50.9 1.0
CZ A:PHE414 4.6 43.9 1.0
CA A:CYS506 4.7 55.9 1.0
CD2 A:HIS412 4.9 41.6 1.0
N A:LEU531 5.0 47.0 1.0

Reference:

X.Jiang, Q.Huang, W.Wang, H.Dong, H.Ly, Y.Liang, C.Dong. Structures of Arenaviral Nucleoproteins with Triphosphate Dsrna Reveal A Unique Mechanism of Immune Suppression. J.Biol.Chem. V. 288 16949 2013.
ISSN: ISSN 0021-9258
PubMed: 23615902
DOI: 10.1074/JBC.M112.420521
Page generated: Wed Dec 16 05:20:59 2020

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