Zinc in PDB 4e7v: The Structure of R6 Bovine Insulin

The structure of The Structure of R6 Bovine Insulin, PDB code: 4e7v was solved by P.Harris, C.G.Frankaer, M.V.Knudsen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.88 / 1.80
Space group	H 3 1
Cell size a, b, c (Å), α, β, γ (°)	156.240, 156.240, 78.880, 90.00, 90.00, 120.00
R / Rfree (%)	20.9 / 27.2

The structure of The Structure of R6 Bovine Insulin also contains other interesting chemical elements:

Chlorine

(Cl)

8 atoms

The binding sites of Zinc atom in the The Structure of R6 Bovine Insulin (pdb code 4e7v). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 8 binding sites of Zinc where determined in the The Structure of R6 Bovine Insulin, PDB code: 4e7v:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Zinc binding site 1 out of 8 in the The Structure of R6 Bovine Insulin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Structure of R6 Bovine Insulin within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn101 b:24.2 occ:1.00 NE2 J:HIS10 2.0 22.8 1.0 NE2 F:HIS10 2.1 19.2 1.0 NE2 B:HIS10 2.1 23.3 1.0 CL F:CL101 2.2 25.9 1.0 CD2 F:HIS10 3.0 21.9 1.0 CD2 B:HIS10 3.0 18.1 1.0 CE1 J:HIS10 3.0 33.3 1.0 CD2 J:HIS10 3.0 18.1 1.0 CE1 F:HIS10 3.1 25.1 1.0 CE1 B:HIS10 3.1 32.5 1.0 ND1 J:HIS10 4.1 27.3 1.0 CG F:HIS10 4.1 25.2 1.0 ND1 F:HIS10 4.2 30.9 1.0 CG B:HIS10 4.2 20.8 1.0 CG J:HIS10 4.2 17.5 1.0 ND1 B:HIS10 4.2 28.4 1.0 O B:LEU6 4.8 24.8 1.0 CB J:LEU6 4.8 24.5 1.0 O J:LEU6 4.8 29.7 1.0 CB B:LEU6 4.8 27.8 1.0 O B:HOH217 4.9 46.1 1.0 O F:LEU6 4.9 27.9 1.0 CB F:LEU6 5.0 28.8 1.0

Zinc binding site 2 out of 8 in the The Structure of R6 Bovine Insulin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Structure of R6 Bovine Insulin within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn101 b:21.1 occ:1.00 NE2 L:HIS10 2.0 20.1 1.0 NE2 D:HIS10 2.1 19.7 1.0 NE2 H:HIS10 2.1 20.3 1.0 CL D:CL102 2.2 20.4 1.0 CD2 L:HIS10 2.9 18.4 1.0 CD2 D:HIS10 3.0 19.6 1.0 CD2 H:HIS10 3.0 21.2 1.0 CE1 L:HIS10 3.0 23.6 1.0 CE1 D:HIS10 3.1 21.7 1.0 CE1 H:HIS10 3.1 20.5 1.0 O H:HOH116 3.7 47.4 1.0 ND1 L:HIS10 4.1 25.6 1.0 CG L:HIS10 4.1 19.8 1.0 CG D:HIS10 4.2 20.9 1.0 ND1 D:HIS10 4.2 23.2 1.0 CG H:HIS10 4.2 16.8 1.0 ND1 H:HIS10 4.2 21.6 1.0 O H:HOH120 4.9 46.9 1.0 O H:HOH118 4.9 44.1 1.0 O L:LEU6 4.9 23.5 1.0 CB L:LEU6 4.9 18.7 1.0 O D:LEU6 4.9 22.6 1.0 O H:LEU6 4.9 21.8 1.0 CB H:LEU6 5.0 20.9 1.0

Zinc binding site 3 out of 8 in the The Structure of R6 Bovine Insulin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of The Structure of R6 Bovine Insulin within 5.0Å range: probe atom residue distance (Å) B Occ N:Zn101 b:18.9 occ:1.00 NE2 R:HIS10 2.0 15.4 1.0 NE2 N:HIS10 2.1 16.8 1.0 NE2 V:HIS10 2.1 17.1 1.0 CL N:CL102 2.1 21.1 1.0 CE1 R:HIS10 3.0 28.7 1.0 CE1 N:HIS10 3.0 32.3 1.0 CD2 R:HIS10 3.0 15.4 1.0 CD2 V:HIS10 3.0 17.1 1.0 CE1 V:HIS10 3.1 29.5 1.0 CD2 N:HIS10 3.1 17.7 1.0 O V:HOH107 3.7 40.0 1.0 ND1 R:HIS10 4.1 22.3 1.0 ND1 N:HIS10 4.1 20.3 1.0 CG R:HIS10 4.2 18.4 1.0 ND1 V:HIS10 4.2 23.2 1.0 CG V:HIS10 4.2 15.9 1.0 CG N:HIS10 4.2 16.8 1.0 O V:HOH122 4.7 50.4 1.0 O R:LEU6 4.8 17.9 1.0 O V:LEU6 4.8 18.1 1.0 O N:LEU6 4.9 16.3 1.0 O N:HOH205 4.9 41.0 1.0 O R:HOH115 4.9 53.7 1.0 CB N:LEU6 4.9 22.7 1.0 CB R:LEU6 4.9 22.5 1.0 CB V:LEU6 5.0 21.3 1.0

Zinc binding site 4 out of 8 in the The Structure of R6 Bovine Insulin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of The Structure of R6 Bovine Insulin within 5.0Å range: probe atom residue distance (Å) B Occ P:Zn101 b:21.7 occ:1.00 NE2 T:HIS10 2.1 23.2 1.0 NE2 X:HIS10 2.1 22.6 1.0 NE2 P:HIS10 2.2 21.7 1.0 CL P:CL102 2.3 23.3 1.0 CD2 T:HIS10 3.0 16.6 1.0 CD2 P:HIS10 3.0 23.3 1.0 CD2 X:HIS10 3.1 21.6 1.0 CE1 T:HIS10 3.1 21.8 1.0 CE1 X:HIS10 3.2 26.0 1.0 CE1 P:HIS10 3.2 27.8 1.0 CG T:HIS10 4.2 19.3 1.0 ND1 T:HIS10 4.2 19.9 1.0 CG P:HIS10 4.2 21.5 1.0 CG X:HIS10 4.2 19.8 1.0 ND1 X:HIS10 4.2 25.3 1.0 ND1 P:HIS10 4.3 24.5 1.0 O P:HOH203 4.7 38.8 1.0 O T:HOH108 4.8 39.4 1.0 O P:LEU6 4.8 19.0 1.0 O X:HOH105 4.9 42.0 1.0 O T:LEU6 4.9 17.0 1.0 CB T:LEU6 4.9 23.2 1.0 O X:LEU6 4.9 21.9 1.0 CB X:LEU6 4.9 22.7 1.0

Zinc binding site 5 out of 8 in the The Structure of R6 Bovine Insulin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of The Structure of R6 Bovine Insulin within 5.0Å range: probe atom residue distance (Å) B Occ Z:Zn101 b:20.0 occ:0.33 NE2 Z:HIS10 2.1 19.6 1.0 CL Z:CL102 2.1 24.6 0.3 CE1 Z:HIS10 3.0 31.3 1.0 CD2 Z:HIS10 3.1 19.5 1.0 O Z:HOH212 3.5 44.2 0.3 ND1 Z:HIS10 4.1 25.8 1.0 CG Z:HIS10 4.2 19.8 1.0 O Z:LEU6 4.9 19.1 1.0 CB Z:LEU6 4.9 20.9 1.0 O Z:HOH220 5.0 51.8 1.0

Zinc binding site 6 out of 8 in the The Structure of R6 Bovine Insulin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of The Structure of R6 Bovine Insulin within 5.0Å range: probe atom residue distance (Å) B Occ 2:Zn101 b:28.5 occ:0.33 NE2 2:HIS10 2.2 27.4 1.0 CL 2:CL102 2.4 29.6 0.3 CD2 2:HIS10 3.1 26.9 1.0 CE1 2:HIS10 3.2 27.7 1.0 ND1 2:HIS10 4.3 26.7 1.0 CG 2:HIS10 4.3 25.0 1.0 O 2:HOH207 4.8 46.6 1.0 O 2:LEU6 4.9 28.3 1.0

Zinc binding site 7 out of 8 in the The Structure of R6 Bovine Insulin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of The Structure of R6 Bovine Insulin within 5.0Å range: probe atom residue distance (Å) B Occ 4:Zn101 b:33.8 occ:0.33 NE2 4:HIS10 2.1 30.8 1.0 CL 4:CL102 2.4 34.1 0.3 CE1 4:HIS10 3.0 38.3 1.0 CD2 4:HIS10 3.1 31.2 1.0 ND1 4:HIS10 4.2 35.9 1.0 CG 4:HIS10 4.2 25.9 1.0 O 4:LEU6 4.6 38.3 1.0 CB 4:LEU6 4.8 40.1 1.0

Zinc binding site 8 out of 8 in the The Structure of R6 Bovine Insulin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of The Structure of R6 Bovine Insulin within 5.0Å range: probe atom residue distance (Å) B Occ 6:Zn101 b:21.3 occ:0.33 NE2 6:HIS10 2.1 23.4 1.0 CL 6:CL102 2.2 23.6 0.3 CD2 6:HIS10 3.0 23.0 1.0 CE1 6:HIS10 3.1 25.7 1.0 ND1 6:HIS10 4.2 24.3 1.0 CG 6:HIS10 4.2 19.3 1.0 O 6:LEU6 4.9 25.6 1.0 CB 6:LEU6 5.0 22.1 1.0

C.G.Frankar, M.V.Knudsen, K.Noren, E.Nazarenko, K.Stahl, P.Harris. The Structures of T(6), T(3)R(3) and R(6) Bovine Insulin: Combining X-Ray Diffraction and Absorption Spectroscopy. Acta Crystallogr.,Sect.D V. 68 1259 2012.
ISSN: ISSN 0907-4449
PubMed: 22993080
DOI: 10.1107/S090744491202625X