Zinc in PDB 4e6r: Crystal Structure of A Cytoplasmic Protein NCK2 (NCK2) From Homo Sapiens at 2.20 A Resolution

The structure of Crystal Structure of A Cytoplasmic Protein NCK2 (NCK2) From Homo Sapiens at 2.20 A Resolution, PDB code: 4e6r was solved by Joint Center For Structural Genomics (Jcsg), Partnership For T-Cellbiology (Tcell), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.86 / 2.20
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	108.398, 108.398, 68.199, 90.00, 90.00, 120.00
R / Rfree (%)	20.1 / 22.7

The binding sites of Zinc atom in the Crystal Structure of A Cytoplasmic Protein NCK2 (NCK2) From Homo Sapiens at 2.20 A Resolution (pdb code 4e6r). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 5 binding sites of Zinc where determined in the Crystal Structure of A Cytoplasmic Protein NCK2 (NCK2) From Homo Sapiens at 2.20 A Resolution, PDB code: 4e6r:
Jump to Zinc binding site number: 1; 2; 3; 4; 5;

Zinc binding site 1 out of 5 in the Crystal Structure of A Cytoplasmic Protein NCK2 (NCK2) From Homo Sapiens at 2.20 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Cytoplasmic Protein NCK2 (NCK2) From Homo Sapiens at 2.20 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:55.1 occ:1.00 OE2 A:GLU142 1.8 71.5 1.0 OE1 B:GLU127 2.2 60.3 1.0 N3 A:IMD204 2.2 47.5 1.0 CD A:GLU142 2.5 67.6 1.0 C2 A:IMD204 2.6 53.5 1.0 OE1 A:GLU142 2.6 58.1 1.0 CD B:GLU127 3.0 55.7 1.0 OE2 B:GLU127 3.1 56.4 1.0 C4 A:IMD204 3.5 75.0 1.0 N1 A:IMD204 3.9 73.7 1.0 CG A:GLU142 3.9 61.3 1.0 C5 A:IMD204 4.3 63.8 1.0 CG B:GLU127 4.4 48.9 1.0 CZ2 A:TRP159 4.4 50.8 1.0 CH2 A:TRP159 4.6 51.2 1.0 CB A:GLU142 4.9 56.9 1.0

Zinc binding site 2 out of 5 in the Crystal Structure of A Cytoplasmic Protein NCK2 (NCK2) From Homo Sapiens at 2.20 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Cytoplasmic Protein NCK2 (NCK2) From Homo Sapiens at 2.20 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn202 b:0.1 occ:1.00 O A:HOH709 1.9 72.0 1.0 OE1 A:GLU125 2.5 83.1 1.0 OE2 A:GLU125 2.9 72.6 1.0 O A:HOH711 2.9 53.7 0.5 O A:HOH708 2.9 67.0 1.0 CD A:GLU125 3.0 78.1 1.0 O A:HOH711 3.1 45.3 0.5 CG A:GLU125 4.6 75.7 1.0 OH A:TYR122 4.9 50.9 1.0

Zinc binding site 3 out of 5 in the Crystal Structure of A Cytoplasmic Protein NCK2 (NCK2) From Homo Sapiens at 2.20 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of A Cytoplasmic Protein NCK2 (NCK2) From Homo Sapiens at 2.20 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn203 b:95.4 occ:1.00 OD1 A:ASP170 2.4 91.9 1.0 OE1 A:GLU168 2.9 93.9 1.0 CD A:GLU168 3.3 98.3 1.0 CG A:ASP170 3.6 0.0 1.0 CG A:GLU168 3.8 83.8 1.0 OE2 A:GLU168 4.0 0.5 1.0 OD2 A:ASP170 4.2 0.4 1.0 CE2 A:PHE117 4.3 96.4 1.0 CZ A:PHE117 4.3 98.5 1.0 CB A:GLU168 4.6 72.9 1.0 O A:VAL169 4.6 82.6 1.0 CB A:ASP170 4.8 95.2 1.0 CA A:ASP170 4.8 90.3 1.0

Zinc binding site 4 out of 5 in the Crystal Structure of A Cytoplasmic Protein NCK2 (NCK2) From Homo Sapiens at 2.20 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of A Cytoplasmic Protein NCK2 (NCK2) From Homo Sapiens at 2.20 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn205 b:60.9 occ:1.00 OE2 B:GLU142 1.9 70.5 1.0 N3 A:IMD207 2.0 46.3 1.0 OE1 A:GLU127 2.4 84.5 1.0 C2 A:IMD207 2.5 54.4 1.0 CD B:GLU142 2.6 73.6 1.0 OE1 B:GLU142 2.6 63.3 1.0 OE2 A:GLU127 3.0 72.5 1.0 CD A:GLU127 3.1 68.6 1.0 C4 A:IMD207 3.4 68.0 1.0 N1 A:IMD207 3.8 60.8 1.0 CG B:GLU142 4.0 55.3 1.0 C5 A:IMD207 4.2 57.9 1.0 CZ2 B:TRP159 4.5 43.1 1.0 CG A:GLU127 4.5 60.9 1.0 CH2 B:TRP159 4.6 45.8 1.0 O B:HOH310 4.7 68.6 1.0

Zinc binding site 5 out of 5 in the Crystal Structure of A Cytoplasmic Protein NCK2 (NCK2) From Homo Sapiens at 2.20 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of A Cytoplasmic Protein NCK2 (NCK2) From Homo Sapiens at 2.20 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn202 b:69.3 occ:1.00 O B:HOH303 2.0 50.9 1.0 O B:HOH320 2.3 59.7 1.0 OE2 B:GLU125 2.5 66.9 1.0 OE1 B:GLU125 2.6 47.7 1.0 O B:HOH319 2.6 57.6 1.0 CD B:GLU125 2.8 45.6 1.0 O B:HOH302 2.8 55.0 1.0 O B:HOH318 3.5 63.7 1.0 O B:HOH316 4.3 49.0 1.0 CG B:GLU125 4.3 43.2 1.0 OH B:TYR122 4.5 41.5 1.0 CE1 B:TYR122 4.7 39.1 1.0

Joint Center For Structural Genomics (Jcsg), Partnership For T-Cell Biology (Tcell). Crystal Structure of A Cytoplasmic Protein NCK2 (NCK2) From Homo Sapiens at 2.20 A Resolution To Be Published.