Atomistry » Zinc » PDB 4c6n-4ci1 » 4ccg
Atomistry »
  Zinc »
    PDB 4c6n-4ci1 »
      4ccg »

Zinc in PDB 4ccg: Structure of An E2-E3 Complex

Protein crystallography data

The structure of Structure of An E2-E3 Complex, PDB code: 4ccg was solved by C.Hodson, A.Purkiss, H.Walden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.817 / 2.40
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 109.224, 109.224, 117.728, 90.00, 90.00, 90.00
R / Rfree (%) 21.24 / 24.76

Other elements in 4ccg:

The structure of Structure of An E2-E3 Complex also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Sodium (Na) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of An E2-E3 Complex (pdb code 4ccg). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Structure of An E2-E3 Complex, PDB code: 4ccg:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 4ccg

Go back to Zinc Binding Sites List in 4ccg
Zinc binding site 1 out of 4 in the Structure of An E2-E3 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of An E2-E3 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Zn1374

b:38.7
occ:1.00
ND1 X:HIS334 2.1 42.3 1.0
SG X:CYS337 2.3 44.4 1.0
SG X:CYS310 2.3 39.2 1.0
SG X:CYS307 2.3 36.1 1.0
CB X:CYS307 2.9 30.9 1.0
CE1 X:HIS334 3.0 45.4 1.0
CG X:HIS334 3.1 41.6 1.0
CB X:CYS310 3.3 43.1 1.0
CB X:CYS337 3.3 38.8 1.0
CB X:HIS334 3.4 34.7 1.0
N X:CYS310 3.8 34.2 1.0
N X:HIS334 4.1 38.9 1.0
CA X:CYS310 4.1 37.0 1.0
NE2 X:HIS334 4.2 44.1 1.0
CD2 X:HIS334 4.2 39.1 1.0
CD2 X:LEU315 4.3 48.7 1.0
CA X:HIS334 4.4 37.1 1.0
CA X:CYS307 4.4 30.5 1.0
CA X:CYS337 4.6 40.0 1.0
N X:CYS337 4.8 43.2 1.0
C X:ILE309 4.9 36.1 1.0
CB X:ILE309 4.9 33.0 1.0
C X:CYS307 4.9 34.0 1.0
O X:ALA312 4.9 42.9 1.0
C X:CYS310 4.9 33.7 1.0
CB X:LEU315 5.0 47.5 1.0

Zinc binding site 2 out of 4 in 4ccg

Go back to Zinc Binding Sites List in 4ccg
Zinc binding site 2 out of 4 in the Structure of An E2-E3 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of An E2-E3 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Zn1375

b:48.9
occ:1.00
SG X:CYS359 2.2 49.5 1.0
SG X:CYS324 2.3 55.9 1.0
SG X:CYS329 2.3 50.6 1.0
SG X:CYS362 2.3 46.0 1.0
CB X:CYS329 3.0 46.9 1.0
CB X:CYS359 3.1 40.3 1.0
CB X:CYS324 3.2 42.5 1.0
CB X:CYS362 3.3 38.3 1.0
N X:CYS362 3.7 48.9 1.0
CA X:CYS362 4.1 47.2 1.0
CA X:CYS329 4.5 50.4 1.0
CB X:TYR361 4.5 44.5 1.0
CB X:ASN326 4.5 52.9 1.0
N X:GLY330 4.5 45.6 1.0
CA X:CYS359 4.6 43.3 1.0
CA X:CYS324 4.6 46.8 1.0
N X:GLN331 4.8 44.8 1.0
C X:TYR361 4.8 52.3 1.0
CB X:GLN331 4.8 40.7 1.0
ND2 X:ASN326 4.9 59.8 1.0
O X:HOH2016 4.9 53.1 1.0
C X:CYS329 4.9 46.5 1.0
C X:CYS362 4.9 51.9 1.0
CA X:TYR361 5.0 47.0 1.0

Zinc binding site 3 out of 4 in 4ccg

Go back to Zinc Binding Sites List in 4ccg
Zinc binding site 3 out of 4 in the Structure of An E2-E3 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of An E2-E3 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
Y:Zn1372

b:63.4
occ:1.00
ND1 Y:HIS334 2.0 64.4 1.0
SG Y:CYS337 2.3 67.7 1.0
SG Y:CYS310 2.3 62.4 1.0
SG Y:CYS307 2.4 63.1 1.0
CB Y:CYS307 2.8 64.1 1.0
CE1 Y:HIS334 3.0 63.8 1.0
CG Y:HIS334 3.0 63.3 1.0
CB Y:CYS310 3.3 55.6 1.0
CB Y:HIS334 3.4 59.6 1.0
CB Y:CYS337 3.4 71.2 1.0
N Y:CYS310 3.8 53.0 1.0
N Y:HIS334 4.0 65.0 1.0
CD2 Y:LEU315 4.1 72.2 1.0
NE2 Y:HIS334 4.1 65.7 1.0
CA Y:CYS310 4.1 52.5 1.0
CD2 Y:HIS334 4.2 64.1 1.0
CA Y:HIS334 4.3 62.9 1.0
CA Y:CYS307 4.3 61.5 1.0
CA Y:CYS337 4.7 72.0 1.0
O Y:ALA312 4.8 69.0 1.0
CB Y:ILE309 4.8 55.2 1.0
C Y:ILE309 4.9 55.3 1.0
C Y:CYS310 4.9 55.1 1.0
C Y:CYS307 4.9 59.6 1.0
N Y:CYS337 5.0 76.0 1.0
CB Y:LEU315 5.0 77.6 1.0

Zinc binding site 4 out of 4 in 4ccg

Go back to Zinc Binding Sites List in 4ccg
Zinc binding site 4 out of 4 in the Structure of An E2-E3 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure of An E2-E3 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
Y:Zn1373

b:58.0
occ:1.00
SG Y:CYS359 2.3 59.5 1.0
SG Y:CYS362 2.3 59.2 1.0
SG Y:CYS324 2.3 64.9 1.0
SG Y:CYS329 2.4 61.3 1.0
CB Y:CYS329 2.9 51.9 1.0
CB Y:CYS359 3.0 57.9 1.0
CB Y:CYS324 3.3 59.5 1.0
CB Y:CYS362 3.3 58.6 1.0
N Y:CYS362 3.7 60.1 1.0
CA Y:CYS362 4.1 58.9 1.0
CB Y:TYR361 4.4 53.0 1.0
CA Y:CYS329 4.4 54.1 1.0
N Y:GLY330 4.4 58.8 1.0
CB Y:ASN326 4.5 58.4 1.0
CA Y:CYS359 4.5 56.8 1.0
CA Y:CYS324 4.7 61.8 1.0
C Y:TYR361 4.7 55.8 1.0
N Y:GLN331 4.8 56.7 1.0
C Y:CYS329 4.9 60.5 1.0
ND2 Y:ASN326 4.9 57.9 1.0
CA Y:TYR361 4.9 56.6 1.0
C Y:CYS362 4.9 60.6 1.0
N Y:TYR361 4.9 58.0 1.0

Reference:

C.Hodson, A.Purkiss, J.A.Miles, H.Walden. Structure of the Human Fancl Ring-UBE2T Complex Reveals Determinants of Cognate E3-E2 Selection. Structure V. 22 337 2014.
ISSN: ISSN 0969-2126
PubMed: 24389026
DOI: 10.1016/J.STR.2013.12.004
Page generated: Wed Dec 16 05:08:25 2020

Last articles

Ca in 5X7J
Ca in 5X9S
Ca in 5X7S
Ca in 5X7Q
Ca in 5X7P
Ca in 5X7O
Ca in 5X8F
Ca in 5X7H
Ca in 5X7G
Ca in 5X6I
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy