Zinc in PDB 4c3b: Hrsv M2-1, P21 Crystal Form

The structure of Hrsv M2-1, P21 Crystal Form, PDB code: 4c3b was solved by S.J.Tanner, A.Ariza, C.A.Richard, W.Wu, J.Trincao, J.A.Hiscox, M.W.Carroll, N.J.Silman, J.F.Eleouet, T.A.Edwards, J.N.Barr, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	140.88 / 2.95
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	91.853, 141.616, 141.694, 90.00, 96.14, 90.00
R / Rfree (%)	20.538 / 25.458

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Zinc atom in the Hrsv M2-1, P21 Crystal Form (pdb code 4c3b). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 16 binding sites of Zinc where determined in the Hrsv M2-1, P21 Crystal Form, PDB code: 4c3b:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 16 in the Hrsv M2-1, P21 Crystal Form


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Hrsv M2-1, P21 Crystal Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:42.2 occ:1.00 SG A:CYS21 2.1 40.3 1.0 SG A:CYS7 2.2 38.8 1.0 NE2 A:HIS25 2.2 40.0 1.0 SG A:CYS15 2.4 19.7 1.0 CE1 A:HIS25 3.0 39.6 1.0 CB A:CYS7 3.1 40.0 1.0 CD2 A:HIS25 3.2 42.1 1.0 CB A:CYS15 3.2 24.2 1.0 CB A:CYS21 3.3 45.8 1.0 ND1 A:HIS25 4.2 37.7 1.0 CG A:HIS25 4.3 38.1 1.0 CA A:CYS7 4.3 36.5 1.0 CB A:PHE23 4.4 52.9 1.0 CA A:CYS15 4.6 27.3 1.0 CA A:CYS21 4.6 44.9 1.0 O A:PHE23 4.7 53.8 1.0 CB A:PHE9 4.8 42.2 1.0 C A:CYS21 4.9 40.9 1.0 ND2 A:ASN17 5.0 86.1 1.0 N A:PHE23 5.0 57.6 1.0 CD1 A:PHE9 5.0 39.4 1.0

Zinc binding site 2 out of 16 in the Hrsv M2-1, P21 Crystal Form


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Hrsv M2-1, P21 Crystal Form within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn201 b:32.7 occ:1.00 SG B:CYS7 2.1 34.8 1.0 SG B:CYS21 2.1 32.4 1.0 NE2 B:HIS25 2.2 36.6 1.0 SG B:CYS15 2.3 20.8 1.0 CE1 B:HIS25 3.0 32.4 1.0 CB B:CYS7 3.1 34.6 1.0 CB B:CYS15 3.2 26.9 1.0 CD2 B:HIS25 3.2 40.6 1.0 CB B:CYS21 3.3 41.2 1.0 ND1 B:HIS25 4.2 33.1 1.0 CG B:HIS25 4.3 30.9 1.0 CA B:CYS7 4.3 33.4 1.0 CB B:PHE23 4.4 34.1 1.0 CA B:CYS15 4.6 33.3 1.0 CA B:CYS21 4.7 40.7 1.0 O B:PHE23 4.7 27.9 1.0 CB B:PHE9 4.7 36.6 1.0 ND2 B:ASN17 4.9 52.8 1.0 CD1 B:PHE9 5.0 41.2 1.0 C B:CYS21 5.0 39.4 1.0

Zinc binding site 3 out of 16 in the Hrsv M2-1, P21 Crystal Form


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Hrsv M2-1, P21 Crystal Form within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn201 b:30.7 occ:1.00 NE2 C:HIS25 2.1 25.5 1.0 SG C:CYS7 2.2 31.6 1.0 SG C:CYS21 2.2 39.8 1.0 SG C:CYS15 2.4 22.7 1.0 CE1 C:HIS25 2.9 25.6 1.0 CB C:CYS7 3.0 32.0 1.0 CD2 C:HIS25 3.1 27.2 1.0 CB C:CYS15 3.2 23.1 1.0 CB C:CYS21 3.4 42.8 1.0 ND1 C:HIS25 4.0 27.8 1.0 CG C:HIS25 4.1 25.6 1.0 CA C:CYS7 4.3 30.0 1.0 CB C:PHE23 4.3 40.3 1.0 O C:PHE23 4.6 35.9 1.0 CA C:CYS15 4.6 27.4 1.0 CA C:CYS21 4.7 38.8 1.0 CB C:PHE9 4.8 42.0 1.0 N C:PHE23 4.9 46.7 1.0 C C:CYS21 4.9 39.1 1.0

Zinc binding site 4 out of 16 in the Hrsv M2-1, P21 Crystal Form


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Hrsv M2-1, P21 Crystal Form within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn201 b:33.5 occ:1.00 NE2 D:HIS25 2.0 36.6 1.0 SG D:CYS21 2.2 32.1 1.0 SG D:CYS7 2.2 36.5 1.0 SG D:CYS15 2.3 17.6 1.0 CE1 D:HIS25 2.9 36.1 1.0 CD2 D:HIS25 3.0 38.5 1.0 CB D:CYS7 3.0 38.7 1.0 CB D:CYS15 3.2 21.6 1.0 CB D:CYS21 3.3 34.6 1.0 ND1 D:HIS25 4.0 35.3 1.0 CG D:HIS25 4.1 35.8 1.0 CA D:CYS7 4.4 35.6 1.0 CB D:PHE23 4.4 42.4 1.0 CA D:CYS15 4.6 24.2 1.0 O D:PHE23 4.6 36.6 1.0 CA D:CYS21 4.7 38.0 1.0 CB D:PHE9 4.9 37.4 1.0 C D:CYS21 4.9 41.7 1.0 N D:PHE23 5.0 45.3 1.0

Zinc binding site 5 out of 16 in the Hrsv M2-1, P21 Crystal Form


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Hrsv M2-1, P21 Crystal Form within 5.0Å range: probe atom residue distance (Å) B Occ E:Zn201 b:31.9 occ:1.00 NE2 E:HIS25 2.0 29.4 1.0 SG E:CYS21 2.1 32.1 1.0 SG E:CYS7 2.3 27.4 1.0 SG E:CYS15 2.3 21.3 1.0 CE1 E:HIS25 2.8 30.2 1.0 CD2 E:HIS25 3.1 32.4 1.0 CB E:CYS7 3.1 30.5 1.0 CB E:CYS21 3.2 38.3 1.0 CB E:CYS15 3.2 24.3 1.0 ND1 E:HIS25 4.0 33.7 1.0 CG E:HIS25 4.1 29.6 1.0 CB E:PHE23 4.4 48.7 1.0 CA E:CYS7 4.4 29.6 1.0 CA E:CYS21 4.6 40.2 1.0 O E:PHE23 4.6 44.3 1.0 CA E:CYS15 4.6 27.6 1.0 C E:CYS21 4.8 41.3 1.0 CB E:PHE9 4.9 39.1 1.0 N E:PHE23 4.9 53.5 1.0

Zinc binding site 6 out of 16 in the Hrsv M2-1, P21 Crystal Form


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Hrsv M2-1, P21 Crystal Form within 5.0Å range: probe atom residue distance (Å) B Occ F:Zn201 b:35.7 occ:1.00 NE2 F:HIS25 2.0 39.2 1.0 SG F:CYS21 2.1 31.6 1.0 SG F:CYS7 2.2 37.1 1.0 SG F:CYS15 2.4 20.4 1.0 CE1 F:HIS25 2.9 36.9 1.0 CB F:CYS7 3.0 36.0 1.0 CD2 F:HIS25 3.1 39.4 1.0 CB F:CYS15 3.2 21.8 1.0 CB F:CYS21 3.3 33.5 1.0 ND1 F:HIS25 4.0 35.6 1.0 CG F:HIS25 4.1 34.0 1.0 CB F:PHE23 4.3 47.8 1.0 CA F:CYS7 4.3 33.1 1.0 O F:PHE23 4.5 43.4 1.0 CA F:CYS21 4.6 37.0 1.0 CA F:CYS15 4.6 23.6 1.0 C F:CYS21 4.9 42.8 1.0 N F:PHE23 4.9 54.4 1.0 CB F:PHE9 4.9 36.9 1.0

Zinc binding site 7 out of 16 in the Hrsv M2-1, P21 Crystal Form


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Hrsv M2-1, P21 Crystal Form within 5.0Å range: probe atom residue distance (Å) B Occ G:Zn201 b:39.8 occ:1.00 NE2 G:HIS25 2.1 36.9 1.0 SG G:CYS21 2.1 37.3 1.0 SG G:CYS7 2.3 35.0 1.0 SG G:CYS15 2.3 22.6 1.0 CE1 G:HIS25 2.9 35.8 1.0 CB G:CYS7 3.1 34.1 1.0 CD2 G:HIS25 3.1 39.9 1.0 CB G:CYS21 3.2 37.7 1.0 CB G:CYS15 3.2 26.6 1.0 ND1 G:HIS25 4.1 32.8 1.0 CG G:HIS25 4.2 33.2 1.0 CA G:CYS7 4.4 32.8 1.0 CB G:PHE23 4.4 51.1 1.0 CA G:CYS21 4.6 40.6 1.0 CA G:CYS15 4.6 29.8 1.0 O G:PHE23 4.6 43.5 1.0 CB G:PHE9 4.9 34.8 1.0 C G:CYS21 4.9 40.1 1.0 N G:PHE23 4.9 53.5 1.0 ND2 G:ASN17 5.0 74.9 1.0

Zinc binding site 8 out of 16 in the Hrsv M2-1, P21 Crystal Form


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Hrsv M2-1, P21 Crystal Form within 5.0Å range: probe atom residue distance (Å) B Occ H:Zn201 b:37.9 occ:1.00 SG H:CYS21 2.1 38.9 1.0 NE2 H:HIS25 2.1 40.0 1.0 SG H:CYS7 2.2 28.1 1.0 SG H:CYS15 2.4 19.3 1.0 CE1 H:HIS25 3.0 38.9 1.0 CB H:CYS7 3.1 31.3 1.0 CD2 H:HIS25 3.2 43.2 1.0 CB H:CYS21 3.3 48.1 1.0 CB H:CYS15 3.3 24.2 1.0 ND1 H:HIS25 4.1 41.1 1.0 CG H:HIS25 4.2 39.0 1.0 CA H:CYS7 4.3 28.5 1.0 CB H:PHE23 4.4 44.1 1.0 CA H:CYS21 4.6 50.5 1.0 O H:PHE23 4.6 44.0 1.0 CA H:CYS15 4.6 30.2 1.0 CB H:PHE9 4.8 42.4 1.0 C H:CYS21 4.9 50.5 1.0 N H:PHE23 4.9 46.8 1.0 ND2 H:ASN17 5.0 49.7 1.0

Zinc binding site 9 out of 16 in the Hrsv M2-1, P21 Crystal Form


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Hrsv M2-1, P21 Crystal Form within 5.0Å range: probe atom residue distance (Å) B Occ I:Zn201 b:57.0 occ:1.00 NE2 I:HIS25 2.1 76.6 1.0 SG I:CYS21 2.1 82.3 1.0 SG I:CYS7 2.2 56.3 1.0 SG I:CYS15 2.4 30.1 1.0 CE1 I:HIS25 2.9 72.2 1.0 CB I:CYS7 3.0 48.6 1.0 CD2 I:HIS25 3.1 67.8 1.0 CB I:CYS15 3.2 38.5 1.0 CB I:CYS21 3.3 81.8 1.0 ND1 I:HIS25 4.0 65.1 1.0 CG I:HIS25 4.2 60.5 1.0 CA I:CYS7 4.3 45.9 1.0 CB I:PHE23 4.4 80.0 1.0 O I:PHE23 4.6 65.3 1.0 CA I:CYS15 4.6 44.6 1.0 CA I:CYS21 4.7 76.5 1.0 CB I:PHE9 4.9 52.5 1.0 N I:PHE23 4.9 89.2 1.0 C I:CYS21 4.9 77.5 1.0

Zinc binding site 10 out of 16 in the Hrsv M2-1, P21 Crystal Form


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Hrsv M2-1, P21 Crystal Form within 5.0Å range: probe atom residue distance (Å) B Occ J:Zn201 b:53.8 occ:1.00 SG J:CYS7 2.0 46.5 1.0 NE2 J:HIS25 2.2 64.0 1.0 SG J:CYS21 2.2 63.2 1.0 SG J:CYS15 2.4 28.8 1.0 CB J:CYS7 2.9 44.4 1.0 CE1 J:HIS25 3.0 64.1 1.0 CD2 J:HIS25 3.1 62.9 1.0 CB J:CYS15 3.2 35.9 1.0 CB J:CYS21 3.4 69.5 1.0 ND1 J:HIS25 4.1 64.6 1.0 CA J:CYS7 4.2 43.4 1.0 CG J:HIS25 4.2 58.8 1.0 CB J:PHE23 4.3 77.3 1.0 CA J:CYS15 4.6 44.0 1.0 O J:PHE23 4.6 53.6 1.0 CB J:PHE9 4.8 58.4 1.0 CA J:CYS21 4.8 71.6 1.0 C J:CYS7 4.9 50.6 1.0 N J:PHE23 5.0 77.2 1.0

S.J.Tanner, A.Ariza, C.Richard, H.F.Kyle, R.L.Dods, M.Blondot, W.Wu, J.Trincao, C.H.Trinh, J.A.Hiscox, M.W.Carroll, N.J.Silman, J.Eleouet, T.A.Edwards, J.N.Barr. Crystal Structure of the Essential Transcription Antiterminator M2-1 Protein of Human Respiratory Syncytial Virus and Implications of Its Phosphorylation. Proc.Natl.Acad.Sci.Usa V. 111 1580 2014.
ISSN: ISSN 0027-8424
PubMed: 24434552
DOI: 10.1073/PNAS.1317262111