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Zinc in PDB 4bzi: The Structure of the Copii Coat Assembled on Membranes

Other elements in 4bzi:

The structure of The Structure of the Copii Coat Assembled on Membranes also contains other interesting chemical elements:

Magnesium (Mg) 3 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the The Structure of the Copii Coat Assembled on Membranes (pdb code 4bzi). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the The Structure of the Copii Coat Assembled on Membranes, PDB code: 4bzi:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in 4bzi

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Zinc binding site 1 out of 6 in the The Structure of the Copii Coat Assembled on Membranes


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Structure of the Copii Coat Assembled on Membranes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1769

b:42.7
occ:1.00
 SG A:CYS56 2.4 36.6 1.0
SG A:CYS61 2.4 44.9 1.0
SG A:CYS80 2.4 40.9 1.0
SG A:CYS83 2.4 42.3 1.0
CB A:CYS80 3.1 39.6 1.0
CB A:CYS56 3.3 36.3 1.0
CB A:CYS61 3.4 46.9 1.0
CB A:CYS83 3.5 42.7 1.0
N A:CYS83 3.8 39.3 1.0
CB A:SER63 4.1 41.4 1.0
CA A:CYS83 4.2 42.0 1.0
OG A:SER85 4.3 49.4 1.0
OG A:SER63 4.3 42.7 1.0
CA A:GLY58 4.5 50.4 1.0
CA A:CYS80 4.5 39.7 1.0
CB A:ILE82 4.5 35.5 1.0
N A:GLY58 4.6 47.8 1.0
N A:SER63 4.6 41.4 1.0
ND2 A:ASN87 4.7 52.8 1.0
CA A:CYS56 4.8 36.7 1.0
CA A:CYS61 4.8 48.0 1.0
C A:ILE82 4.8 38.1 1.0
N A:ASN84 4.8 44.8 1.0
C A:CYS83 4.9 43.5 1.0
C A:CYS80 5.0 38.4 1.0
CA A:SER63 5.0 40.8 1.0

Zinc binding site 2 out of 6 in 4bzi

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Zinc binding site 2 out of 6 in the The Structure of the Copii Coat Assembled on Membranes


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Structure of the Copii Coat Assembled on Membranes within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn1769

b:42.7
occ:1.00
 SG D:CYS56 2.4 36.6 1.0
SG D:CYS61 2.4 44.9 1.0
SG D:CYS80 2.4 40.9 1.0
SG D:CYS83 2.4 42.3 1.0
CB D:CYS80 3.1 39.6 1.0
CB D:CYS56 3.3 36.3 1.0
CB D:CYS61 3.4 46.9 1.0
CB D:CYS83 3.5 42.7 1.0
N D:CYS83 3.8 39.3 1.0
CB D:SER63 4.1 41.4 1.0
CA D:CYS83 4.2 42.0 1.0
OG D:SER85 4.3 49.4 1.0
OG D:SER63 4.3 42.7 1.0
CA D:GLY58 4.5 50.4 1.0
CA D:CYS80 4.5 39.7 1.0
CB D:ILE82 4.5 35.5 1.0
N D:GLY58 4.6 47.8 1.0
N D:SER63 4.6 41.4 1.0
ND2 D:ASN87 4.7 52.8 1.0
CA D:CYS56 4.8 36.7 1.0
CA D:CYS61 4.8 48.0 1.0
C D:ILE82 4.8 38.1 1.0
N D:ASN84 4.8 44.8 1.0
C D:CYS83 4.9 43.5 1.0
C D:CYS80 5.0 38.4 1.0
CA D:SER63 5.0 40.8 1.0

Zinc binding site 3 out of 6 in 4bzi

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Zinc binding site 3 out of 6 in the The Structure of the Copii Coat Assembled on Membranes


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of The Structure of the Copii Coat Assembled on Membranes within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn1927

b:36.3
occ:1.00
 SG E:CYS253 2.4 39.4 1.0
SG E:CYS256 2.4 35.9 1.0
SG E:CYS231 2.4 36.5 1.0
SG E:CYS234 2.4 38.7 1.0
CB E:CYS253 3.0 39.5 1.0
CB E:CYS256 3.1 35.5 1.0
CB E:CYS234 3.1 33.6 1.0
CB E:CYS231 3.3 36.8 1.0
N E:CYS256 3.5 34.7 1.0
N E:CYS234 3.6 35.2 1.0
CA E:CYS256 3.8 33.4 1.0
CA E:CYS234 3.9 34.4 1.0
C E:CYS256 4.4 32.8 1.0
CA E:CYS253 4.5 38.9 1.0
C E:PHE255 4.5 34.9 1.0
CB E:PHE255 4.5 32.6 1.0
N E:ARG257 4.6 35.7 1.0
C E:CYS234 4.7 33.8 1.0
CB E:ARG233 4.7 37.2 1.0
C E:ARG233 4.7 36.0 1.0
CA E:CYS231 4.8 38.3 1.0
N E:LEU258 4.8 35.3 1.0
N E:ARG235 4.8 33.6 1.0
CB E:LEU258 4.8 34.9 1.0
CA E:PHE255 4.9 33.9 1.0
CB E:SER236 5.0 35.0 1.0

Zinc binding site 4 out of 6 in 4bzi

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Zinc binding site 4 out of 6 in the The Structure of the Copii Coat Assembled on Membranes


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of The Structure of the Copii Coat Assembled on Membranes within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn1769

b:42.7
occ:1.00
 SG G:CYS56 2.4 36.6 1.0
SG G:CYS61 2.4 44.9 1.0
SG G:CYS80 2.4 40.9 1.0
SG G:CYS83 2.4 42.3 1.0
CB G:CYS80 3.1 39.6 1.0
CB G:CYS56 3.3 36.3 1.0
CB G:CYS61 3.4 46.9 1.0
CB G:CYS83 3.5 42.7 1.0
N G:CYS83 3.8 39.3 1.0
CB G:SER63 4.1 41.4 1.0
CA G:CYS83 4.2 42.0 1.0
OG G:SER85 4.3 49.4 1.0
OG G:SER63 4.3 42.7 1.0
CA G:GLY58 4.5 50.4 1.0
CA G:CYS80 4.5 39.7 1.0
CB G:ILE82 4.5 35.5 1.0
N G:GLY58 4.6 47.8 1.0
N G:SER63 4.6 41.4 1.0
ND2 G:ASN87 4.7 52.8 1.0
CA G:CYS56 4.8 36.7 1.0
CA G:CYS61 4.8 48.0 1.0
C G:ILE82 4.8 38.1 1.0
N G:ASN84 4.8 44.8 1.0
C G:CYS83 4.9 43.5 1.0
C G:CYS80 5.0 38.4 1.0
CA G:SER63 5.0 40.8 1.0

Zinc binding site 5 out of 6 in 4bzi

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Zinc binding site 5 out of 6 in the The Structure of the Copii Coat Assembled on Membranes


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of The Structure of the Copii Coat Assembled on Membranes within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Zn1927

b:36.3
occ:1.00
 SG L:CYS253 2.4 39.4 1.0
SG L:CYS256 2.4 35.9 1.0
SG L:CYS231 2.4 36.5 1.0
SG L:CYS234 2.4 38.7 1.0
CB L:CYS253 3.0 39.5 1.0
CB L:CYS256 3.1 35.5 1.0
CB L:CYS234 3.1 33.6 1.0
CB L:CYS231 3.3 36.8 1.0
N L:CYS256 3.5 34.7 1.0
N L:CYS234 3.6 35.2 1.0
CA L:CYS256 3.8 33.4 1.0
CA L:CYS234 3.9 34.4 1.0
C L:CYS256 4.4 32.8 1.0
CA L:CYS253 4.5 38.9 1.0
C L:PHE255 4.5 34.9 1.0
CB L:PHE255 4.5 32.6 1.0
N L:ARG257 4.6 35.7 1.0
C L:CYS234 4.7 33.8 1.0
CB L:ARG233 4.7 37.2 1.0
C L:ARG233 4.7 36.0 1.0
CA L:CYS231 4.8 38.3 1.0
N L:LEU258 4.8 35.3 1.0
N L:ARG235 4.8 33.6 1.0
CB L:LEU258 4.8 34.9 1.0
CA L:PHE255 4.9 33.9 1.0
CB L:SER236 5.0 35.0 1.0

Zinc binding site 6 out of 6 in 4bzi

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Zinc binding site 6 out of 6 in the The Structure of the Copii Coat Assembled on Membranes


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of The Structure of the Copii Coat Assembled on Membranes within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Zn1927

b:36.3
occ:1.00
 SG M:CYS253 2.4 39.4 1.0
SG M:CYS256 2.4 35.9 1.0
SG M:CYS231 2.4 36.5 1.0
SG M:CYS234 2.4 38.7 1.0
CB M:CYS253 3.0 39.5 1.0
CB M:CYS256 3.1 35.5 1.0
CB M:CYS234 3.1 33.6 1.0
CB M:CYS231 3.3 36.8 1.0
N M:CYS256 3.5 34.7 1.0
N M:CYS234 3.6 35.2 1.0
CA M:CYS256 3.8 33.4 1.0
CA M:CYS234 3.9 34.4 1.0
C M:CYS256 4.4 32.8 1.0
CA M:CYS253 4.5 38.9 1.0
C M:PHE255 4.5 34.9 1.0
CB M:PHE255 4.5 32.6 1.0
N M:ARG257 4.6 35.7 1.0
C M:CYS234 4.7 33.8 1.0
CB M:ARG233 4.7 37.2 1.0
C M:ARG233 4.7 36.0 1.0
CA M:CYS231 4.8 38.3 1.0
N M:LEU258 4.8 35.3 1.0
N M:ARG235 4.8 33.6 1.0
CB M:LEU258 4.8 34.9 1.0
CA M:PHE255 4.9 33.9 1.0
CB M:SER236 5.0 35.0 1.0

Reference:

G.Zanetti, S.Prinz, S.Daum, A.Meister, R.Schekman, K.Bacia, J.A.G.Briggs. The Structure of the Copii Transport-Vesicle Coat Assembled on Membranes Elife V. 2 00951 2013.
ISSN: ISSN 1521-6543
PubMed: 24062940
DOI: 10.7554/ELIFE.00951
Page generated: Sat Oct 26 20:15:46 2024

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