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Zinc in PDB 4ayb: Rnap at 3.2ANG

Enzymatic activity of Rnap at 3.2ANG

All present enzymatic activity of Rnap at 3.2ANG:
2.7.7.6;

Protein crystallography data

The structure of Rnap at 3.2ANG, PDB code: 4ayb was solved by M.N.Wojtas, M.Mogni, O.Millet, S.D.Bell, N.G.A.Abrescia, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.10 / 3.20
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 195.725, 212.415, 128.757, 90.00, 90.00, 90.00
R / Rfree (%) 24.3 / 30.1

Other elements in 4ayb:

The structure of Rnap at 3.2ANG also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Iron (Fe) 3 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Rnap at 3.2ANG (pdb code 4ayb). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 10 binding sites of Zinc where determined in the Rnap at 3.2ANG, PDB code: 4ayb:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 10 in 4ayb

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Zinc binding site 1 out of 10 in the Rnap at 3.2ANG


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Rnap at 3.2ANG within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1880

b:81.4
occ:1.00
HD2 A:HIS71 2.0 81.4 1.0
NE2 A:HIS71 2.1 98.3 1.0
SG A:CYS68 2.1 0.7 1.0
SG A:CYS58 2.2 0.3 1.0
SG A:CYS61 2.3 0.9 1.0
CD2 A:HIS71 2.3 97.6 1.0
HA A:CYS68 2.7 81.4 1.0
HB2 A:CYS61 2.8 81.4 1.0
CB A:CYS68 2.8 0.6 1.0
HB3 A:CYS68 3.0 81.4 1.0
CA A:CYS68 3.0 0.9 1.0
CB A:CYS61 3.1 0.1 1.0
C A:CYS68 3.2 0.3 1.0
HA2 A:GLY50 3.3 81.4 1.0
O A:CYS68 3.3 0.2 1.0
CE1 A:HIS71 3.4 97.4 1.0
CB A:CYS58 3.5 0.5 1.0
HB3 A:CYS58 3.6 81.4 1.0
HB2 A:CYS58 3.6 81.4 1.0
HB3 A:CYS61 3.6 81.4 1.0
CG A:HIS71 3.6 96.2 1.0
HD2 A:PRO69 3.7 81.4 1.0
HB2 A:CYS68 3.7 81.4 1.0
HE1 A:HIS71 3.9 81.4 1.0
N A:PRO69 3.9 86.1 1.0
ND1 A:HIS71 4.1 96.1 1.0
CA A:GLY50 4.2 84.4 1.0
CD A:PRO69 4.3 0.5 1.0
CA A:CYS61 4.3 0.3 1.0
OG1 A:THR60 4.4 0.9 1.0
H A:CYS61 4.4 81.4 1.0
N A:CYS61 4.4 0.0 1.0
N A:CYS68 4.5 0.1 1.0
O A:GLY70 4.5 81.0 1.0
HG21 A:VAL51 4.5 81.4 1.0
HA3 A:GLY50 4.5 81.4 1.0
HG1 A:THR60 4.6 81.4 1.0
O A:PRO69 4.7 82.2 1.0
HB2 A:HIS71 4.7 81.4 1.0
H A:GLY50 4.7 81.4 1.0
H A:GLY62 4.7 81.4 1.0
N A:GLY50 4.8 84.9 1.0
HD3 A:PRO69 4.8 81.4 1.0
CB A:HIS71 4.8 95.2 1.0
H A:VAL51 4.8 81.4 1.0
C A:PRO69 4.8 82.0 1.0
CA A:CYS58 4.9 0.3 1.0
HB2 A:ASN63 4.9 81.4 1.0
HA A:CYS61 4.9 81.4 1.0
C A:THR60 4.9 0.8 1.0
H A:CYS68 4.9 81.4 1.0
HD1 A:HIS71 4.9 81.4 1.0
H A:THR60 4.9 81.4 1.0
O A:ASN67 5.0 0.7 1.0
CA A:PRO69 5.0 82.8 1.0

Zinc binding site 2 out of 10 in 4ayb

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Zinc binding site 2 out of 10 in the Rnap at 3.2ANG


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Rnap at 3.2ANG within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1881

b:81.4
occ:1.00
HB3 A:CYS149 1.6 81.4 1.0
HB2 A:CYS149 1.7 81.4 1.0
CB A:CYS149 1.8 97.2 1.0
HB3 A:CYS146 1.8 81.4 1.0
SG A:CYS98 2.1 0.4 1.0
SG A:CYS149 2.2 91.9 1.0
SG A:CYS101 2.2 0.1 1.0
SG A:CYS146 2.3 0.8 1.0
CB A:CYS146 2.4 0.4 1.0
HB2 A:CYS146 2.9 81.4 1.0
CB A:CYS101 3.2 0.9 1.0
HB3 A:CYS101 3.3 81.4 1.0
HZ A:PHE154 3.3 81.4 1.0
CA A:CYS149 3.3 0.2 1.0
HB2 A:CYS101 3.3 81.4 1.0
HG2 A:LYS152 3.4 81.4 1.0
HA A:CYS98 3.5 81.4 1.0
O A:CYS98 3.5 94.1 1.0
CB A:CYS98 3.5 0.2 1.0
O A:CYS149 3.7 0.5 1.0
HA A:CYS149 3.7 81.4 1.0
CA A:CYS146 3.7 0.7 1.0
HA A:CYS146 3.8 81.4 1.0
HB2 A:CYS98 3.9 81.4 1.0
H A:LYS152 3.9 81.4 1.0
C A:CYS149 3.9 0.6 1.0
CA A:CYS98 3.9 88.1 1.0
CZ A:PHE154 4.1 0.0 1.0
HG3 A:LYS152 4.1 81.4 1.0
N A:CYS149 4.1 0.6 1.0
HE2 A:LYS152 4.1 81.4 1.0
CG A:LYS152 4.1 1.0 1.0
O A:PRO147 4.2 0.3 1.0
C A:CYS98 4.2 90.5 1.0
HB3 A:CYS98 4.3 81.4 1.0
C A:CYS146 4.4 0.9 1.0
C A:HIS148 4.4 0.8 1.0
O A:HIS148 4.5 0.2 1.0
HE2 A:PHE154 4.5 81.4 1.0
H A:CYS149 4.6 81.4 1.0
H A:CYS101 4.6 81.4 1.0
CA A:CYS101 4.7 0.1 1.0
H A:GLU151 4.7 81.4 1.0
CE2 A:PHE154 4.7 0.5 1.0
N A:LYS152 4.8 0.5 1.0
N A:CYS146 4.8 0.4 1.0
O A:CYS146 4.8 0.8 1.0
H A:CYS146 4.8 81.4 1.0
HG12 A:ILE106 4.8 81.4 1.0
HA A:GLU151 4.9 81.4 1.0
HE1 A:PHE154 4.9 81.4 1.0
HB2 A:LYS152 4.9 81.4 1.0
CE A:LYS152 4.9 0.1 1.0
CE1 A:PHE154 4.9 0.8 1.0
HB A:VAL104 4.9 81.4 1.0
HA A:CYS101 5.0 81.4 1.0
HB2 A:HIS148 5.0 81.4 1.0

Zinc binding site 3 out of 10 in 4ayb

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Zinc binding site 3 out of 10 in the Rnap at 3.2ANG


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Rnap at 3.2ANG within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1882

b:81.4
occ:1.00
OE1 C:GLU80 2.0 66.7 1.0
OE2 C:GLU80 2.0 67.4 1.0
ND1 A:HIS426 2.0 35.5 1.0
CD C:GLU80 2.3 67.4 1.0
HG1 A:THR488 2.8 81.4 1.0
CE1 A:HIS426 2.8 35.0 1.0
HE1 A:HIS426 2.9 81.4 1.0
HB2 A:ARG490 2.9 81.4 1.0
CG A:HIS426 3.1 35.4 1.0
OG1 A:THR488 3.2 0.3 1.0
HE A:ARG490 3.2 81.4 1.0
HB3 A:HIS426 3.4 81.4 1.0
HB2 A:HIS426 3.6 81.4 1.0
CB A:HIS426 3.6 36.0 1.0
HG3 A:ARG490 3.8 81.4 1.0
CG C:GLU80 3.8 68.5 1.0
CB A:ARG490 3.8 54.6 1.0
NE2 A:HIS426 4.0 34.6 1.0
H A:ARG490 4.0 81.4 1.0
NE A:ARG490 4.1 54.0 1.0
HB3 A:ARG490 4.1 81.4 1.0
CD2 A:HIS426 4.2 34.9 1.0
HH21 A:ARG490 4.2 81.4 1.0
HD2 A:PRO489 4.2 81.4 1.0
HG3 C:GLU80 4.2 81.4 1.0
HG2 C:GLU80 4.2 81.4 1.0
CG A:ARG490 4.3 54.9 1.0
HD13 A:ILE495 4.5 81.4 1.0
HB2 C:GLU80 4.5 81.4 1.0
CB A:THR488 4.6 0.6 1.0
CB C:GLU80 4.7 68.6 1.0
HA C:SER77 4.7 81.4 1.0
HB A:THR488 4.7 81.4 1.0
N A:ARG490 4.7 31.7 1.0
HB3 C:GLU80 4.7 81.4 1.0
HE2 A:HIS426 4.7 81.4 1.0
CD A:ARG490 4.8 55.0 1.0
NH2 A:ARG490 4.8 53.2 1.0
HG13 A:ILE428 4.9 81.4 1.0
CA A:ARG490 4.9 32.3 1.0
HB A:ILE428 4.9 81.4 1.0
HG12 A:ILE428 4.9 81.4 1.0
CZ A:ARG490 5.0 54.0 1.0
HG22 A:THR488 5.0 81.4 1.0

Zinc binding site 4 out of 10 in 4ayb

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Zinc binding site 4 out of 10 in the Rnap at 3.2ANG


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Rnap at 3.2ANG within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1883

b:81.4
occ:1.00
OD2 A:ASP241 2.0 0.6 1.0
NE2 A:HIS237 2.0 0.9 1.0
CD2 A:HIS237 2.9 0.8 1.0
CE1 A:HIS237 3.0 1.0 1.0
HD2 A:HIS237 3.1 81.4 1.0
CG A:ASP241 3.1 0.3 1.0
HE1 A:HIS237 3.3 81.4 1.0
OD1 A:ASP241 3.6 0.5 1.0
HG A:SER287 3.9 81.4 1.0
HZ3 A:LYS238 3.9 81.4 1.0
CG A:HIS237 4.1 1.0 1.0
ND1 A:HIS237 4.1 0.8 1.0
OG A:SER287 4.2 84.0 1.0
HD2 A:LYS238 4.2 81.4 1.0
CB A:ASP241 4.4 0.5 1.0
HD12 A:LEU295 4.4 81.4 1.0
HZ1 A:LYS238 4.4 81.4 1.0
HE1 A:HIS272 4.5 81.4 1.0
HB3 A:ASP241 4.5 81.4 1.0
HB2 A:ASP241 4.5 81.4 1.0
NZ A:LYS238 4.6 96.7 1.0
HD3 A:LYS238 4.7 81.4 1.0
HA A:LYS238 4.7 81.4 1.0
HD13 A:LEU295 4.8 81.4 1.0
O A:HIS237 4.9 0.1 1.0
CD A:LYS238 4.9 94.0 1.0
HD1 A:HIS237 4.9 81.4 1.0
CE1 A:HIS272 4.9 88.3 1.0

Zinc binding site 5 out of 10 in 4ayb

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Zinc binding site 5 out of 10 in the Rnap at 3.2ANG


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Rnap at 3.2ANG within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn2126

b:81.4
occ:1.00
ND1 B:HIS1085 2.1 74.0 1.0
SG B:CYS1067 2.3 0.5 1.0
SG B:CYS1064 2.3 67.0 1.0
SG B:CYS1082 2.4 73.0 1.0
HB2 B:CYS1067 2.5 81.4 1.0
H B:HIS1085 2.9 81.4 1.0
CE1 B:HIS1085 2.9 74.8 1.0
CB B:CYS1067 2.9 99.5 1.0
HB B:ILE1084 2.9 81.4 1.0
HE1 B:HIS1085 3.0 81.4 1.0
HB2 B:CYS1064 3.0 81.4 1.0
CB B:CYS1064 3.1 63.7 1.0
CG B:HIS1085 3.3 76.3 1.0
HB2 B:HIS1085 3.3 81.4 1.0
HB3 B:CYS1064 3.3 81.4 1.0
HG B:SER1089 3.4 81.4 1.0
HB3 B:CYS1067 3.4 81.4 1.0
N B:HIS1085 3.7 94.3 1.0
CB B:HIS1085 3.7 76.3 1.0
HB2 B:CYS1082 3.8 81.4 1.0
CB B:CYS1082 3.8 70.2 1.0
H B:ILE1084 3.8 81.4 1.0
CB B:ILE1084 3.9 72.7 1.0
HG23 B:ILE1084 4.0 81.4 1.0
NE2 B:HIS1085 4.1 77.4 1.0
HB3 B:CYS1082 4.2 81.4 1.0
CA B:CYS1067 4.2 0.7 1.0
OG B:SER1089 4.2 0.5 1.0
CD2 B:HIS1085 4.3 78.5 1.0
N B:CYS1067 4.3 0.5 1.0
H B:CYS1067 4.3 81.4 1.0
CG2 B:ILE1084 4.3 75.3 1.0
HG22 B:ILE1084 4.3 81.4 1.0
CA B:HIS1085 4.3 96.0 1.0
N B:ILE1084 4.4 81.1 1.0
HD11 B:ILE1084 4.4 81.4 1.0
HB2 B:TYR1069 4.5 81.4 1.0
CA B:ILE1084 4.5 83.7 1.0
HB3 B:SER1089 4.5 81.4 1.0
C B:ILE1084 4.5 85.5 1.0
CA B:CYS1064 4.6 50.3 1.0
HG3 B:GLN1066 4.6 81.4 1.0
HB3 B:HIS1085 4.6 81.4 1.0
HA B:CYS1067 4.6 81.4 1.0
HD2 B:PRO1083 4.6 81.4 1.0
H B:GLN1066 4.6 81.4 1.0
HG2 B:PRO1083 4.7 81.4 1.0
H B:TYR1069 4.7 81.4 1.0
HA B:CYS1064 4.8 81.4 1.0
CB B:SER1089 4.8 0.9 1.0
HE2 B:HIS1085 4.8 81.4 1.0
CG1 B:ILE1084 4.9 72.0 1.0
HB2 B:SER1089 4.9 81.4 1.0
H B:GLY1068 4.9 81.4 1.0
C B:GLN1066 4.9 0.8 1.0
HG12 B:ILE1084 4.9 81.4 1.0
HD2 B:TYR1069 4.9 81.4 1.0
HD22 B:LEU1091 5.0 81.4 1.0
H B:ASP1065 5.0 81.4 1.0

Zinc binding site 6 out of 10 in 4ayb

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Zinc binding site 6 out of 10 in the Rnap at 3.2ANG


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Rnap at 3.2ANG within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn2127

b:81.4
occ:1.00
ND1 B:HIS570 2.0 80.5 1.0
CE1 B:HIS570 2.7 80.8 1.0
HE1 B:HIS570 2.8 81.4 1.0
CG B:HIS570 3.2 81.4 1.0
HB3 B:HIS570 3.2 81.4 1.0
HG22 B:ILE524 3.5 81.4 1.0
CB B:HIS570 3.7 81.5 1.0
OE2 B:GLU622 3.8 65.1 1.0
NE2 B:HIS570 3.9 81.7 1.0
HG23 B:ILE524 3.9 81.4 1.0
HD22 B:ASN572 4.0 81.4 1.0
H B:GLY527 4.0 81.4 1.0
HA2 B:GLY527 4.0 81.4 1.0
HB B:ILE524 4.1 81.4 1.0
CG2 B:ILE524 4.1 77.6 1.0
OD1 B:ASN572 4.1 0.2 1.0
CD2 B:HIS570 4.1 82.1 1.0
HH12 B:ARG174 4.2 81.4 1.0
NH1 B:ARG174 4.3 93.9 1.0
HH22 B:ARG174 4.3 81.4 1.0
HB2 B:HIS570 4.4 81.4 1.0
CZ B:ARG174 4.5 93.8 1.0
NH2 B:ARG174 4.5 93.4 1.0
HA B:HIS570 4.5 81.4 1.0
N B:GLY527 4.5 64.8 1.0
HG2 B:GLU622 4.6 81.4 1.0
HE2 B:HIS570 4.6 81.4 1.0
HH11 B:ARG174 4.7 81.4 1.0
ND2 B:ASN572 4.7 99.8 1.0
CB B:ILE524 4.7 79.3 1.0
CA B:GLY527 4.7 64.7 1.0
CA B:HIS570 4.8 86.3 1.0
CG B:ASN572 4.8 0.2 1.0
HH21 B:ARG174 4.9 81.4 1.0
CD B:GLU622 4.9 64.6 1.0
HG21 B:ILE524 5.0 81.4 1.0

Zinc binding site 7 out of 10 in 4ayb

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Zinc binding site 7 out of 10 in the Rnap at 3.2ANG


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Rnap at 3.2ANG within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn2128

b:81.4
occ:1.00
HE2 B:HIS696 2.2 81.4 1.0
HD3 B:ARG694 2.9 81.4 1.0
NE2 B:HIS696 3.0 50.5 1.0
HB2 B:HIS997 3.3 81.4 1.0
HD2 B:HIS997 3.6 81.4 1.0
HG3 B:ARG694 3.6 81.4 1.0
CD2 B:HIS997 3.6 48.5 1.0
HE1 B:PHE757 3.7 81.4 1.0
CD B:ARG694 3.7 89.0 1.0
HD2 B:HIS696 3.7 81.4 1.0
CG B:HIS997 3.7 48.7 1.0
CD2 B:HIS696 3.8 50.8 1.0
HD2 B:ARG694 3.8 81.4 1.0
CB B:HIS997 4.0 49.1 1.0
CE1 B:HIS696 4.0 50.6 1.0
CG B:ARG694 4.1 89.3 1.0
HB2 B:ARG694 4.2 81.4 1.0
HE1 B:HIS696 4.2 81.4 1.0
HB3 B:HIS997 4.2 81.4 1.0
NE2 B:HIS997 4.3 48.3 1.0
ND1 B:HIS997 4.4 48.7 1.0
CE1 B:PHE757 4.6 33.4 1.0
HE2 B:HIS997 4.7 81.4 1.0
CE1 B:HIS997 4.7 48.4 1.0
CB B:ARG694 4.7 89.6 1.0
O B:ARG694 4.8 61.9 1.0
HG21 B:THR420 4.8 81.4 1.0
OG1 B:THR420 4.9 62.2 1.0
HD1 B:HIS997 4.9 81.4 1.0
NE B:ARG694 4.9 89.1 1.0
CG B:HIS696 5.0 51.2 1.0
HG2 B:ARG694 5.0 81.4 1.0
O B:HIS997 5.0 32.9 1.0

Zinc binding site 8 out of 10 in 4ayb

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Zinc binding site 8 out of 10 in the Rnap at 3.2ANG


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Rnap at 3.2ANG within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn1395

b:81.4
occ:1.00
HE1 C:HIS353 1.2 81.4 1.0
CE1 C:HIS353 1.7 95.7 1.0
HE2 C:HIS353 1.9 81.4 1.0
NE2 C:HIS353 2.0 97.7 1.0
ND1 C:HIS353 3.0 95.6 1.0
HG22 C:VAL349 3.3 81.4 1.0
CD2 C:HIS353 3.4 98.8 1.0
HD1 C:HIS353 3.5 81.4 1.0
HA C:ARG331 3.6 81.4 1.0
CG C:HIS353 3.8 97.5 1.0
HB3 C:ARG344 3.8 81.4 1.0
HB C:VAL349 3.9 81.4 1.0
HG2 C:ARG331 3.9 81.4 1.0
HG2 C:ARG344 4.0 81.4 1.0
HA2 C:GLY336 4.0 81.4 1.0
CG2 C:VAL349 4.0 0.5 1.0
HD2 C:HIS353 4.1 81.4 1.0
HG21 C:VAL349 4.1 81.4 1.0
HE C:ARG344 4.1 81.4 1.0
HG12 C:VAL349 4.2 81.4 1.0
O C:ARG331 4.3 0.7 1.0
O C:GLU348 4.4 57.2 1.0
CB C:VAL349 4.4 0.0 1.0
CA C:ARG331 4.4 0.4 1.0
HD2 C:ARG331 4.5 81.4 1.0
HB3 C:ARG331 4.5 81.4 1.0
CG C:ARG331 4.7 0.1 1.0
CB C:ARG344 4.7 86.6 1.0
CG C:ARG344 4.7 86.3 1.0
C C:ARG331 4.8 0.1 1.0
CB C:ARG331 4.8 0.0 1.0
HA3 C:GLY336 4.8 81.4 1.0
CG1 C:VAL349 4.8 0.4 1.0
HG23 C:VAL349 4.8 81.4 1.0
NE C:ARG344 4.9 89.7 1.0
CA C:GLY336 4.9 85.0 1.0
CD C:ARG331 5.0 0.7 1.0

Zinc binding site 9 out of 10 in 4ayb

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Zinc binding site 9 out of 10 in the Rnap at 3.2ANG


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Rnap at 3.2ANG within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Zn1066

b:88.7
occ:1.00
HG N:CYS10 2.0 81.4 1.0
SG N:CYS45 2.1 1.0 1.0
SG N:CYS44 2.1 74.5 1.0
SG N:CYS10 2.2 0.3 1.0
SG N:CYS7 2.3 85.8 1.0
HB2 N:CYS10 2.4 81.4 1.0
N N:CYS45 2.5 0.5 1.0
HB2 N:CYS45 2.6 81.4 1.0
CB N:CYS45 2.7 0.5 1.0
CB N:CYS10 2.8 0.2 1.0
CA N:CYS45 3.0 0.0 1.0
H N:CYS10 3.3 81.4 1.0
HA N:CYS45 3.3 81.4 1.0
CB N:CYS44 3.3 72.7 1.0
HB2 N:CYS44 3.3 81.4 1.0
HB3 N:CYS10 3.4 81.4 1.0
HE N:ARG42 3.5 81.4 1.0
C N:CYS44 3.5 63.0 1.0
HB3 N:CYS45 3.6 81.4 1.0
CB N:CYS7 3.6 87.6 1.0
HB3 N:CYS7 3.7 81.4 1.0
HB2 N:ARG42 3.7 81.4 1.0
HB2 N:CYS7 3.8 81.4 1.0
HB N:THR9 3.9 81.4 1.0
CA N:CYS44 3.9 61.7 1.0
N N:CYS10 3.9 59.4 1.0
CA N:CYS10 4.0 61.4 1.0
H N:GLY11 4.0 81.4 1.0
H N:CYS44 4.1 81.4 1.0
HB3 N:CYS44 4.1 81.4 1.0
HB3 N:ARG42 4.2 81.4 1.0
NE N:ARG42 4.3 98.2 1.0
N N:CYS44 4.4 63.5 1.0
HG N:SER12 4.4 81.4 1.0
CB N:ARG42 4.4 98.3 1.0
C N:CYS45 4.4 0.6 1.0
O N:PHE8 4.5 97.9 1.0
O N:CYS44 4.5 62.7 1.0
OG N:SER12 4.5 0.1 1.0
HH21 N:ARG42 4.5 81.4 1.0
HD2 N:ARG42 4.5 81.4 1.0
H N:SER12 4.5 81.4 1.0
HA N:CYS10 4.6 81.4 1.0
H N:ARG46 4.6 81.4 1.0
N N:GLY11 4.7 51.2 1.0
CB N:THR9 4.8 41.4 1.0
HA N:CYS44 4.8 81.4 1.0
HH21 N:ARG47 4.8 81.4 1.0
C N:CYS10 4.8 62.6 1.0
HG23 N:THR9 4.8 81.4 1.0
CD N:ARG42 4.9 97.4 1.0
N N:ARG46 4.9 59.2 1.0
HG22 N:THR9 5.0 81.4 1.0
O N:ARG42 5.0 76.4 1.0
HD12 N:ILE14 5.0 81.4 1.0

Zinc binding site 10 out of 10 in 4ayb

Go back to Zinc Binding Sites List in 4ayb
Zinc binding site 10 out of 10 in the Rnap at 3.2ANG


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Rnap at 3.2ANG within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Zn1049

b:0.3
occ:1.00
HG22 P:THR12 1.5 81.4 1.0
OG1 P:THR12 2.0 1.0 1.0
CG2 P:THR12 2.2 0.3 1.0
SG P:CYS26 2.2 55.4 1.0
CB P:THR12 2.3 0.9 1.0
SG P:CYS29 2.3 0.1 1.0
HB P:THR12 2.4 81.4 1.0
SG P:CYS9 2.4 0.4 1.0
HB2 P:TYR28 2.5 81.4 1.0
HB2 P:CYS29 2.7 81.4 1.0
HG21 P:THR12 2.7 81.4 1.0
HG23 P:THR12 2.9 81.4 1.0
CB P:CYS29 3.0 0.9 1.0
H P:CYS29 3.0 81.4 1.0
N P:CYS29 3.3 0.3 1.0
CB P:TYR28 3.5 0.8 1.0
HD1 P:TYR28 3.6 81.4 1.0
CA P:CYS29 3.7 0.1 1.0
CA P:THR12 3.8 0.4 1.0
HB3 P:CYS29 3.8 81.4 1.0
C P:TYR28 3.9 96.1 1.0
CB P:CYS26 3.9 53.6 1.0
O P:TRP10 3.9 0.9 1.0
HB3 P:TYR28 3.9 81.4 1.0
H P:TYR28 4.0 81.4 1.0
HB3 P:CYS26 4.1 81.4 1.0
HA P:CYS29 4.1 81.4 1.0
CA P:TYR28 4.1 96.1 1.0
O P:LYS8 4.2 93.4 1.0
HB P:THR14 4.2 81.4 1.0
HB2 P:CYS26 4.2 81.4 1.0
HG1 P:THR14 4.2 81.4 1.0
CB P:CYS9 4.2 0.8 1.0
HA P:THR12 4.2 81.4 1.0
CD1 P:TYR28 4.3 0.6 1.0
CG P:TYR28 4.3 0.5 1.0
H P:THR14 4.3 81.4 1.0
N P:THR12 4.4 0.5 1.0
OG1 P:THR14 4.4 0.2 1.0
H P:PHE13 4.4 81.4 1.0
N P:TYR28 4.4 94.5 1.0
HB3 P:CYS9 4.5 81.4 1.0
C P:THR12 4.6 0.6 1.0
HB2 P:CYS9 4.6 81.4 1.0
H P:THR12 4.7 81.4 1.0
O P:TYR28 4.7 97.7 1.0
N P:PHE13 4.7 87.4 1.0
CB P:THR14 4.8 0.1 1.0
HB2 P:TYR31 4.8 81.4 1.0
H P:TRP10 4.8 81.4 1.0
O P:LYS11 4.8 0.8 1.0
C P:LYS11 4.9 0.1 1.0
HG3 P:LYS11 4.9 81.4 1.0
C P:CYS29 5.0 0.3 1.0

Reference:

M.N.Wojtas, M.Mogni, O.Millet, S.D.Bell, N.G.A.Abrescia. Structural and Functional Analyses of the Interaction of Archaeal Rna Polymerase with Dna. Nucleic Acids Res. V. 40 9941 2012.
ISSN: ISSN 0305-1048
PubMed: 22848102
DOI: 10.1093/NAR/GKS692
Page generated: Wed Dec 16 05:04:22 2020

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