Atomistry » Zinc » PDB 3zqj-4a3c » 4a24
Atomistry »
  Zinc »
    PDB 3zqj-4a3c »
      4a24 »

Zinc in PDB 4a24: Structural and Functional Analysis of the Deaf-1 and BS69 Mynd Domains

Zinc Binding Sites:

The binding sites of Zinc atom in the Structural and Functional Analysis of the Deaf-1 and BS69 Mynd Domains (pdb code 4a24). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structural and Functional Analysis of the Deaf-1 and BS69 Mynd Domains, PDB code: 4a24:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 4a24

Go back to Zinc Binding Sites List in 4a24
Zinc binding site 1 out of 2 in the Structural and Functional Analysis of the Deaf-1 and BS69 Mynd Domains


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structural and Functional Analysis of the Deaf-1 and BS69 Mynd Domains within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn601

b:0.0
occ:1.00
SG A:CYS528 2.3 0.0 1.0
SG A:CYS507 2.3 0.0 1.0
SG A:CYS524 2.3 0.0 1.0
SG A:CYS504 2.3 0.0 1.0
HB3 A:ASN506 3.0 0.0 1.0
HD21 A:ASN506 3.1 0.0 1.0
HB2 A:CYS507 3.2 0.0 1.0
HB3 A:CYS524 3.2 0.0 1.0
H A:CYS524 3.3 0.0 1.0
HB2 A:CYS528 3.4 0.0 1.0
CB A:CYS507 3.4 0.0 1.0
CB A:CYS528 3.4 0.0 1.0
CB A:CYS524 3.4 0.0 1.0
CB A:CYS504 3.4 0.0 1.0
HB3 A:CYS504 3.5 0.0 1.0
HB3 A:CYS528 3.6 0.0 1.0
HB2 A:CYS504 3.6 0.0 1.0
H A:CYS507 3.7 0.0 1.0
HG A:SER525 3.8 0.0 1.0
N A:CYS507 3.9 0.0 1.0
N A:CYS524 3.9 0.0 1.0
H A:SER525 3.9 0.0 1.0
CB A:ASN506 4.1 0.0 1.0
ND2 A:ASN506 4.1 0.0 1.0
HB3 A:CYS507 4.2 0.0 1.0
H A:ASN506 4.2 0.0 1.0
HB2 A:CYS524 4.2 0.0 1.0
CA A:CYS524 4.2 0.0 1.0
CA A:CYS507 4.2 0.0 1.0
C A:ASN506 4.4 0.0 1.0
HB3 A:TYR523 4.4 0.0 1.0
OG A:SER525 4.5 0.0 1.0
CG A:ASN506 4.6 0.0 1.0
H A:GLY508 4.6 0.0 1.0
N A:SER525 4.6 0.0 1.0
CA A:ASN506 4.6 0.0 1.0
HB2 A:ASN506 4.7 0.0 1.0
H A:CYS528 4.7 0.0 1.0
HA A:TYR523 4.7 0.0 1.0
CA A:CYS528 4.7 0.0 1.0
N A:ASN506 4.8 0.0 1.0
HD22 A:ASN506 4.8 0.0 1.0
HA A:CYS507 4.8 0.0 1.0
CA A:CYS504 4.8 0.0 1.0
HD2 A:TYR523 4.9 0.0 1.0
C A:CYS524 4.9 0.0 1.0
HD2 A:PHE527 4.9 0.0 1.0
C A:TYR523 4.9 0.0 1.0

Zinc binding site 2 out of 2 in 4a24

Go back to Zinc Binding Sites List in 4a24
Zinc binding site 2 out of 2 in the Structural and Functional Analysis of the Deaf-1 and BS69 Mynd Domains


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structural and Functional Analysis of the Deaf-1 and BS69 Mynd Domains within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn602

b:0.0
occ:1.00
NE2 A:HIS536 2.0 0.0 1.0
SG A:CYS518 2.3 0.0 1.0
SG A:CYS540 2.3 0.0 1.0
SG A:CYS515 2.3 0.0 1.0
CE1 A:HIS536 2.9 0.0 1.0
CD2 A:HIS536 3.0 0.0 1.0
HE1 A:HIS536 3.1 0.0 1.0
H A:CYS518 3.2 0.0 1.0
HB2 A:CYS540 3.2 0.0 1.0
HD2 A:HIS536 3.2 0.0 1.0
HB3 A:CYS518 3.3 0.0 1.0
HB3 A:CYS515 3.4 0.0 1.0
CB A:CYS540 3.4 0.0 1.0
CB A:CYS518 3.4 0.0 1.0
CB A:CYS515 3.4 0.0 1.0
HB2 A:CYS515 3.7 0.0 1.0
N A:CYS518 3.7 0.0 1.0
HZ3 A:TRP533 3.7 0.0 1.0
HA A:CYS540 3.8 0.0 1.0
ND1 A:HIS536 4.0 0.0 1.0
HE22 A:GLN529 4.0 0.0 1.0
HG23 A:VAL521 4.0 0.0 1.0
CA A:CYS518 4.1 0.0 1.0
CG A:HIS536 4.1 0.0 1.0
O A:CYS518 4.2 0.0 1.0
CA A:CYS540 4.2 0.0 1.0
HB3 A:CYS540 4.2 0.0 1.0
HB2 A:CYS518 4.3 0.0 1.0
HA3 A:GLY517 4.4 0.0 1.0
HD12 A:ILE539 4.4 0.0 1.0
C A:CYS518 4.5 0.0 1.0
HG22 A:VAL521 4.6 0.0 1.0
C A:GLY517 4.6 0.0 1.0
HE1 A:TYR523 4.7 0.0 1.0
CG2 A:VAL521 4.7 0.0 1.0
HG21 A:VAL521 4.8 0.0 1.0
CZ3 A:TRP533 4.8 0.0 1.0
CA A:CYS515 4.8 0.0 1.0
HD1 A:HIS536 4.9 0.0 1.0
HG2 A:LYS520 4.9 0.0 1.0
CA A:GLY517 5.0 0.0 1.0
O A:THR516 5.0 0.0 1.0

Reference:

F.Kateb, H.Perrin, K.Tripsianes, P.Zou, R.Spadaccini, M.Bottomley, T.M.Franzmann, J.Buchner, S.Ansieau, M.Sattler. Structural and Functional Analysis of the Deaf-1 and BS69 Mynd Domains. Plos One V. 8 54715 2013.
ISSN: ESSN 1932-6203
PubMed: 23372760
DOI: 10.1371/JOURNAL.PONE.0054715
Page generated: Wed Dec 16 05:00:20 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy