Zinc in PDB 4a24: Structural and Functional Analysis of the Deaf-1 and BS69 Mynd Domains

The binding sites of Zinc atom in the Structural and Functional Analysis of the Deaf-1 and BS69 Mynd Domains (pdb code 4a24). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structural and Functional Analysis of the Deaf-1 and BS69 Mynd Domains, PDB code: 4a24:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structural and Functional Analysis of the Deaf-1 and BS69 Mynd Domains


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structural and Functional Analysis of the Deaf-1 and BS69 Mynd Domains within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn601 b:0.0 occ:1.00 SG A:CYS528 2.3 0.0 1.0 SG A:CYS507 2.3 0.0 1.0 SG A:CYS524 2.3 0.0 1.0 SG A:CYS504 2.3 0.0 1.0 HB3 A:ASN506 3.0 0.0 1.0 HD21 A:ASN506 3.1 0.0 1.0 HB2 A:CYS507 3.2 0.0 1.0 HB3 A:CYS524 3.2 0.0 1.0 H A:CYS524 3.3 0.0 1.0 HB2 A:CYS528 3.4 0.0 1.0 CB A:CYS507 3.4 0.0 1.0 CB A:CYS528 3.4 0.0 1.0 CB A:CYS524 3.4 0.0 1.0 CB A:CYS504 3.4 0.0 1.0 HB3 A:CYS504 3.5 0.0 1.0 HB3 A:CYS528 3.6 0.0 1.0 HB2 A:CYS504 3.6 0.0 1.0 H A:CYS507 3.7 0.0 1.0 HG A:SER525 3.8 0.0 1.0 N A:CYS507 3.9 0.0 1.0 N A:CYS524 3.9 0.0 1.0 H A:SER525 3.9 0.0 1.0 CB A:ASN506 4.1 0.0 1.0 ND2 A:ASN506 4.1 0.0 1.0 HB3 A:CYS507 4.2 0.0 1.0 H A:ASN506 4.2 0.0 1.0 HB2 A:CYS524 4.2 0.0 1.0 CA A:CYS524 4.2 0.0 1.0 CA A:CYS507 4.2 0.0 1.0 C A:ASN506 4.4 0.0 1.0 HB3 A:TYR523 4.4 0.0 1.0 OG A:SER525 4.5 0.0 1.0 CG A:ASN506 4.6 0.0 1.0 H A:GLY508 4.6 0.0 1.0 N A:SER525 4.6 0.0 1.0 CA A:ASN506 4.6 0.0 1.0 HB2 A:ASN506 4.7 0.0 1.0 H A:CYS528 4.7 0.0 1.0 HA A:TYR523 4.7 0.0 1.0 CA A:CYS528 4.7 0.0 1.0 N A:ASN506 4.8 0.0 1.0 HD22 A:ASN506 4.8 0.0 1.0 HA A:CYS507 4.8 0.0 1.0 CA A:CYS504 4.8 0.0 1.0 HD2 A:TYR523 4.9 0.0 1.0 C A:CYS524 4.9 0.0 1.0 HD2 A:PHE527 4.9 0.0 1.0 C A:TYR523 4.9 0.0 1.0

Zinc binding site 2 out of 2 in the Structural and Functional Analysis of the Deaf-1 and BS69 Mynd Domains


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structural and Functional Analysis of the Deaf-1 and BS69 Mynd Domains within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn602 b:0.0 occ:1.00 NE2 A:HIS536 2.0 0.0 1.0 SG A:CYS518 2.3 0.0 1.0 SG A:CYS540 2.3 0.0 1.0 SG A:CYS515 2.3 0.0 1.0 CE1 A:HIS536 2.9 0.0 1.0 CD2 A:HIS536 3.0 0.0 1.0 HE1 A:HIS536 3.1 0.0 1.0 H A:CYS518 3.2 0.0 1.0 HB2 A:CYS540 3.2 0.0 1.0 HD2 A:HIS536 3.2 0.0 1.0 HB3 A:CYS518 3.3 0.0 1.0 HB3 A:CYS515 3.4 0.0 1.0 CB A:CYS540 3.4 0.0 1.0 CB A:CYS518 3.4 0.0 1.0 CB A:CYS515 3.4 0.0 1.0 HB2 A:CYS515 3.7 0.0 1.0 N A:CYS518 3.7 0.0 1.0 HZ3 A:TRP533 3.7 0.0 1.0 HA A:CYS540 3.8 0.0 1.0 ND1 A:HIS536 4.0 0.0 1.0 HE22 A:GLN529 4.0 0.0 1.0 HG23 A:VAL521 4.0 0.0 1.0 CA A:CYS518 4.1 0.0 1.0 CG A:HIS536 4.1 0.0 1.0 O A:CYS518 4.2 0.0 1.0 CA A:CYS540 4.2 0.0 1.0 HB3 A:CYS540 4.2 0.0 1.0 HB2 A:CYS518 4.3 0.0 1.0 HA3 A:GLY517 4.4 0.0 1.0 HD12 A:ILE539 4.4 0.0 1.0 C A:CYS518 4.5 0.0 1.0 HG22 A:VAL521 4.6 0.0 1.0 C A:GLY517 4.6 0.0 1.0 HE1 A:TYR523 4.7 0.0 1.0 CG2 A:VAL521 4.7 0.0 1.0 HG21 A:VAL521 4.8 0.0 1.0 CZ3 A:TRP533 4.8 0.0 1.0 CA A:CYS515 4.8 0.0 1.0 HD1 A:HIS536 4.9 0.0 1.0 HG2 A:LYS520 4.9 0.0 1.0 CA A:GLY517 5.0 0.0 1.0 O A:THR516 5.0 0.0 1.0

F.Kateb, H.Perrin, K.Tripsianes, P.Zou, R.Spadaccini, M.Bottomley, T.M.Franzmann, J.Buchner, S.Ansieau, M.Sattler. Structural and Functional Analysis of the Deaf-1 and BS69 Mynd Domains. Plos One V. 8 54715 2013.
ISSN: ESSN 1932-6203
PubMed: 23372760
DOI: 10.1371/JOURNAL.PONE.0054715