Zinc in PDB 4a0j: Crystal Structure of Survivin Bound to the Phosphorylated N- Terminal Tail of Histone H3

The structure of Crystal Structure of Survivin Bound to the Phosphorylated N- Terminal Tail of Histone H3, PDB code: 4a0j was solved by A.A.Jeyaprakash, C.Basquin, U.Jayachandran, E.Conti, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	56.937 / 2.80
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	114.365, 70.896, 81.465, 90.00, 129.03, 90.00
R / Rfree (%)	19.77 / 26.84

The binding sites of Zinc atom in the Crystal Structure of Survivin Bound to the Phosphorylated N- Terminal Tail of Histone H3 (pdb code 4a0j). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Survivin Bound to the Phosphorylated N- Terminal Tail of Histone H3, PDB code: 4a0j:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Survivin Bound to the Phosphorylated N- Terminal Tail of Histone H3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Survivin Bound to the Phosphorylated N- Terminal Tail of Histone H3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn801 b:73.0 occ:1.00 NE2 A:HIS77 2.3 92.4 1.0 SG A:CYS84 2.4 77.1 1.0 SG A:CYS57 2.4 70.6 1.0 SG A:CYS60 2.4 77.8 1.0 CE1 A:HIS77 2.7 78.3 1.0 CB A:CYS60 3.0 53.5 1.0 CB A:CYS84 3.0 62.1 1.0 CB A:CYS57 3.2 63.4 1.0 CD2 A:HIS77 3.6 0.3 1.0 N A:CYS60 3.6 84.1 1.0 CA A:CYS60 3.9 77.2 1.0 ND1 A:HIS77 4.0 95.2 1.0 CA A:CYS84 4.4 83.1 1.0 CG A:HIS77 4.4 0.2 1.0 OG A:SER81 4.5 87.2 1.0 CD1 A:LEU87 4.6 92.1 1.0 CA A:CYS57 4.6 77.2 1.0 CB A:PHE59 4.7 64.9 1.0 C A:PHE59 4.7 83.4 1.0 C A:CYS60 4.8 85.4 1.0 N A:PHE61 4.9 81.7 1.0 CB A:SER81 5.0 83.3 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Survivin Bound to the Phosphorylated N- Terminal Tail of Histone H3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Survivin Bound to the Phosphorylated N- Terminal Tail of Histone H3 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn801 b:74.8 occ:1.00 NE2 B:HIS77 2.3 99.4 1.0 SG B:CYS57 2.3 54.6 1.0 SG B:CYS84 2.3 88.3 1.0 SG B:CYS60 2.6 80.0 1.0 CE1 B:HIS77 2.6 84.5 1.0 CB B:CYS60 3.0 66.2 1.0 CB B:CYS84 3.0 73.2 1.0 CB B:CYS57 3.1 59.9 1.0 CD2 B:HIS77 3.6 0.9 1.0 N B:CYS60 3.7 77.2 1.0 ND1 B:HIS77 3.9 77.3 1.0 CA B:CYS60 3.9 67.3 1.0 CG B:HIS77 4.4 97.1 1.0 CA B:CYS84 4.4 83.7 1.0 OG B:SER81 4.5 84.2 1.0 CA B:CYS57 4.6 75.2 1.0 CB B:PHE59 4.7 60.6 1.0 CD1 B:LEU87 4.7 78.0 1.0 C B:PHE59 4.8 84.6 1.0 C B:CYS60 4.8 82.2 1.0 N B:PHE61 4.9 83.7 1.0 CB B:PHE86 4.9 61.0 1.0

A.A.Jeyaprakash, C.Basquin, U.Jayachandran, E.Conti. Structural Basis For the Recognition of Phosphorylated Histone H3 By the Survivin Subunit of the Chromosomal Passenger Complex. Structure V. 19 1625 2011.
ISSN: ISSN 0969-2126
PubMed: 22032967
DOI: 10.1016/J.STR.2011.09.002