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Zinc in PDB 4a0i: Crystal Structure of Survivin Bound to the N-Terminal Tail of HSGO1

Protein crystallography data

The structure of Crystal Structure of Survivin Bound to the N-Terminal Tail of HSGO1, PDB code: 4a0i was solved by A.A.Jeyaprakash, C.Basquin, U.Jayachandran, E.Conti, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.066 / 2.60
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 113.650, 70.514, 82.382, 90.00, 131.80, 90.00
R / Rfree (%) 20.42 / 25.22

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Survivin Bound to the N-Terminal Tail of HSGO1 (pdb code 4a0i). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Survivin Bound to the N-Terminal Tail of HSGO1, PDB code: 4a0i:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 4a0i

Go back to Zinc Binding Sites List in 4a0i
Zinc binding site 1 out of 2 in the Crystal Structure of Survivin Bound to the N-Terminal Tail of HSGO1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Survivin Bound to the N-Terminal Tail of HSGO1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn801

b:77.3
occ:1.00
NE2 A:HIS77 2.2 93.3 1.0
SG A:CYS57 2.2 74.7 1.0
SG A:CYS84 2.3 95.3 1.0
SG A:CYS60 2.4 89.5 1.0
CE1 A:HIS77 2.6 73.0 1.0
CB A:CYS57 3.0 65.2 1.0
CB A:CYS84 3.0 78.4 1.0
CB A:CYS60 3.1 72.2 1.0
N A:CYS60 3.5 79.5 1.0
CD2 A:HIS77 3.5 1.0 1.0
CA A:CYS60 3.9 72.4 1.0
ND1 A:HIS77 3.9 86.0 1.0
CG A:HIS77 4.4 0.1 1.0
CA A:CYS84 4.4 0.3 1.0
CA A:CYS57 4.5 70.8 1.0
C A:PHE59 4.6 78.2 1.0
C A:CYS60 4.6 88.0 1.0
CB A:PHE59 4.7 64.6 1.0
OG A:SER81 4.7 0.2 1.0
CB A:SER81 4.8 98.5 1.0
N A:PHE61 4.8 85.0 1.0
N A:PHE59 4.9 78.7 1.0
CA A:PHE59 4.9 77.7 1.0

Zinc binding site 2 out of 2 in 4a0i

Go back to Zinc Binding Sites List in 4a0i
Zinc binding site 2 out of 2 in the Crystal Structure of Survivin Bound to the N-Terminal Tail of HSGO1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Survivin Bound to the N-Terminal Tail of HSGO1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn801

b:69.8
occ:1.00
NE2 B:HIS77 2.2 82.8 1.0
SG B:CYS84 2.2 86.0 1.0
SG B:CYS57 2.3 63.9 1.0
SG B:CYS60 2.5 84.5 1.0
CE1 B:HIS77 2.6 69.9 1.0
CB B:CYS57 3.0 65.3 1.0
CB B:CYS60 3.0 58.8 1.0
CB B:CYS84 3.1 72.1 1.0
N B:CYS60 3.5 78.4 1.0
CD2 B:HIS77 3.5 98.9 1.0
CA B:CYS60 3.8 73.3 1.0
ND1 B:HIS77 3.9 79.4 1.0
CG B:HIS77 4.4 97.3 1.0
CA B:CYS84 4.4 97.5 1.0
CA B:CYS57 4.4 73.7 1.0
C B:PHE59 4.6 73.8 1.0
C B:CYS60 4.6 78.0 1.0
CB B:PHE59 4.7 53.8 1.0
OG B:SER81 4.7 0.9 1.0
N B:PHE61 4.8 77.5 1.0
CB B:SER81 4.8 97.3 1.0
N B:PHE59 4.9 61.9 1.0
CA B:PHE59 4.9 76.6 1.0

Reference:

A.A.Jeyaprakash, C.Basquin, U.Jayachandran, E.Conti. Structural Basis For the Recognition of Phosphorylated Histone H3 By the Survivin Subunit of the Chromosomal Passenger Complex. Structure V. 19 1625 2011.
ISSN: ISSN 0969-2126
PubMed: 22032967
DOI: 10.1016/J.STR.2011.09.002
Page generated: Wed Dec 16 05:00:12 2020

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