Atomistry » Zinc » PDB 3udz-3ujp » 3ufv
Atomistry »
  Zinc »
    PDB 3udz-3ujp »
      3ufv »

Zinc in PDB 3ufv: Structure of Rat Nitric Oxide Synthase Heme Domain in Complex with 4- Methyl-6-(((3R,4R)-4-((5-(4-Methylpyridin-2-Yl)Pentyl)Oxy)Pyrrolidin- 3-Yl)Methyl)Pyridin-2-Amine

Enzymatic activity of Structure of Rat Nitric Oxide Synthase Heme Domain in Complex with 4- Methyl-6-(((3R,4R)-4-((5-(4-Methylpyridin-2-Yl)Pentyl)Oxy)Pyrrolidin- 3-Yl)Methyl)Pyridin-2-Amine

All present enzymatic activity of Structure of Rat Nitric Oxide Synthase Heme Domain in Complex with 4- Methyl-6-(((3R,4R)-4-((5-(4-Methylpyridin-2-Yl)Pentyl)Oxy)Pyrrolidin- 3-Yl)Methyl)Pyridin-2-Amine:
1.14.13.39;

Protein crystallography data

The structure of Structure of Rat Nitric Oxide Synthase Heme Domain in Complex with 4- Methyl-6-(((3R,4R)-4-((5-(4-Methylpyridin-2-Yl)Pentyl)Oxy)Pyrrolidin- 3-Yl)Methyl)Pyridin-2-Amine, PDB code: 3ufv was solved by H.Li, T.L.Poulos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.06 / 2.08
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 51.669, 110.221, 164.254, 90.00, 90.00, 90.00
R / Rfree (%) 17.5 / 21.8

Other elements in 3ufv:

The structure of Structure of Rat Nitric Oxide Synthase Heme Domain in Complex with 4- Methyl-6-(((3R,4R)-4-((5-(4-Methylpyridin-2-Yl)Pentyl)Oxy)Pyrrolidin- 3-Yl)Methyl)Pyridin-2-Amine also contains other interesting chemical elements:

Iron (Fe) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Rat Nitric Oxide Synthase Heme Domain in Complex with 4- Methyl-6-(((3R,4R)-4-((5-(4-Methylpyridin-2-Yl)Pentyl)Oxy)Pyrrolidin- 3-Yl)Methyl)Pyridin-2-Amine (pdb code 3ufv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of Rat Nitric Oxide Synthase Heme Domain in Complex with 4- Methyl-6-(((3R,4R)-4-((5-(4-Methylpyridin-2-Yl)Pentyl)Oxy)Pyrrolidin- 3-Yl)Methyl)Pyridin-2-Amine, PDB code: 3ufv:

Zinc binding site 1 out of 1 in 3ufv

Go back to Zinc Binding Sites List in 3ufv
Zinc binding site 1 out of 1 in the Structure of Rat Nitric Oxide Synthase Heme Domain in Complex with 4- Methyl-6-(((3R,4R)-4-((5-(4-Methylpyridin-2-Yl)Pentyl)Oxy)Pyrrolidin- 3-Yl)Methyl)Pyridin-2-Amine


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Rat Nitric Oxide Synthase Heme Domain in Complex with 4- Methyl-6-(((3R,4R)-4-((5-(4-Methylpyridin-2-Yl)Pentyl)Oxy)Pyrrolidin- 3-Yl)Methyl)Pyridin-2-Amine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn900

b:38.3
occ:1.00
 SG A:CYS326 2.3 43.8 1.0
SG A:CYS331 2.4 36.9 1.0
SG B:CYS326 2.4 39.8 1.0
SG B:CYS331 2.4 37.4 1.0
CB B:CYS331 3.2 42.6 1.0
CB A:CYS331 3.3 37.9 1.0
CB A:CYS326 3.3 48.2 1.0
CB B:CYS326 3.4 46.6 1.0
CA B:CYS331 3.6 43.0 1.0
CA A:CYS331 3.6 40.6 1.0
N A:MET332 3.9 39.5 1.0
N B:MET332 4.0 41.1 1.0
N A:GLY333 4.1 37.1 1.0
N B:GLY333 4.2 38.1 1.0
C A:CYS331 4.2 39.7 1.0
C B:CYS331 4.2 42.0 1.0
CA A:GLY333 4.5 35.0 1.0
CA B:GLY333 4.6 36.4 1.0
CA A:CYS326 4.7 50.1 1.0
CA B:CYS326 4.8 47.9 1.0
N B:CYS331 4.9 46.0 1.0
N A:CYS331 4.9 42.5 1.0
C A:MET332 4.9 37.7 1.0

Reference:

H.Huang, H.Ji, H.Li, Q.Jing, K.J.Labby, P.Martasek, L.J.Roman, T.L.Poulos, R.B.Silverman. Selective Monocationic Inhibitors of Neuronal Nitric Oxide Synthase. Binding Mode Insights From Molecular Dynamics Simulations. J.Am.Chem.Soc. V. 134 11559 2012.
ISSN: ISSN 0002-7863
PubMed: 22731813
DOI: 10.1021/JA302269R
Page generated: Sat Oct 26 17:16:44 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy