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Zinc in PDB 3sdf: Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Lipoteichoic Acid at 2.1 A Resolution

Protein crystallography data

The structure of Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Lipoteichoic Acid at 2.1 A Resolution, PDB code: 3sdf was solved by P.K.Shukla, L.Gautam, M.Sinha, A.Bhushan, P.Kaur, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 62.00 / 2.10
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 63.417, 50.398, 65.944, 90.00, 107.72, 90.00
R / Rfree (%) 19.7 / 23.4

Other elements in 3sdf:

The structure of Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Lipoteichoic Acid at 2.1 A Resolution also contains other interesting chemical elements:

Iron (Fe) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Lipoteichoic Acid at 2.1 A Resolution (pdb code 3sdf). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Lipoteichoic Acid at 2.1 A Resolution, PDB code: 3sdf:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3sdf

Go back to Zinc Binding Sites List in 3sdf
Zinc binding site 1 out of 2 in the Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Lipoteichoic Acid at 2.1 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Lipoteichoic Acid at 2.1 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn81

b:32.7
occ:1.00
OE2 A:GLU659 2.1 34.8 1.0
OE1 A:GLU659 2.4 30.4 1.0
CD A:GLU659 2.6 29.3 1.0
O A:GLY653 4.0 34.6 1.0
CG A:GLU659 4.1 27.5 1.0
O A:HOH968 4.4 51.6 1.0
CA A:PRO655 4.7 30.2 1.0
CB A:GLU659 4.9 26.3 1.0

Zinc binding site 2 out of 2 in 3sdf

Go back to Zinc Binding Sites List in 3sdf
Zinc binding site 2 out of 2 in the Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Lipoteichoic Acid at 2.1 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Lipoteichoic Acid at 2.1 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn82

b:37.6
occ:1.00
NE2 A:HIS588 2.0 29.0 1.0
CE1 A:HIS588 2.9 28.9 1.0
CD2 A:HIS588 3.1 28.8 1.0
ND1 A:HIS588 4.1 28.7 1.0
CG A:HIS588 4.2 28.4 1.0
CG2 A:VAL591 4.2 25.8 1.0

Reference:

P.K.Shukla, L.Gautam, M.Sinha, A.Bhushan, P.Kaur, S.Sharma, T.P.Singh. Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Lipoteichoic Acid at 2.1 A Resolution To Be Published.
Page generated: Wed Dec 16 04:50:00 2020

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