Zinc in PDB 3sdf: Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Lipoteichoic Acid at 2.1 A Resolution

The structure of Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Lipoteichoic Acid at 2.1 A Resolution, PDB code: 3sdf was solved by P.K.Shukla, L.Gautam, M.Sinha, A.Bhushan, P.Kaur, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	62.00 / 2.10
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	63.417, 50.398, 65.944, 90.00, 107.72, 90.00
R / Rfree (%)	19.7 / 23.4

The structure of Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Lipoteichoic Acid at 2.1 A Resolution also contains other interesting chemical elements:

Iron

(Fe)

1 atom

The binding sites of Zinc atom in the Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Lipoteichoic Acid at 2.1 A Resolution (pdb code 3sdf). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Lipoteichoic Acid at 2.1 A Resolution, PDB code: 3sdf:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Lipoteichoic Acid at 2.1 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Lipoteichoic Acid at 2.1 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn81 b:32.7 occ:1.00 OE2 A:GLU659 2.1 34.8 1.0 OE1 A:GLU659 2.4 30.4 1.0 CD A:GLU659 2.6 29.3 1.0 O A:GLY653 4.0 34.6 1.0 CG A:GLU659 4.1 27.5 1.0 O A:HOH968 4.4 51.6 1.0 CA A:PRO655 4.7 30.2 1.0 CB A:GLU659 4.9 26.3 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Lipoteichoic Acid at 2.1 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Lipoteichoic Acid at 2.1 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn82 b:37.6 occ:1.00 NE2 A:HIS588 2.0 29.0 1.0 CE1 A:HIS588 2.9 28.9 1.0 CD2 A:HIS588 3.1 28.8 1.0 ND1 A:HIS588 4.1 28.7 1.0 CG A:HIS588 4.2 28.4 1.0 CG2 A:VAL591 4.2 25.8 1.0

P.K.Shukla, L.Gautam, M.Sinha, A.Bhushan, P.Kaur, S.Sharma, T.P.Singh. Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Lipoteichoic Acid at 2.1 A Resolution To Be Published.