Atomistry » Zinc » PDB 3riy-3rvh » 3rui
Atomistry »
  Zinc »
    PDB 3riy-3rvh »
      3rui »

Zinc in PDB 3rui: Crystal Structure of ATG7C-ATG8 Complex

Protein crystallography data

The structure of Crystal Structure of ATG7C-ATG8 Complex, PDB code: 3rui was solved by S.B.Hong, B.W.Kim, H.K.Song, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.60 / 1.91
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 71.326, 71.326, 220.916, 90.00, 90.00, 90.00
R / Rfree (%) 19.2 / 21.8

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of ATG7C-ATG8 Complex (pdb code 3rui). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of ATG7C-ATG8 Complex, PDB code: 3rui:

Zinc binding site 1 out of 1 in 3rui

Go back to Zinc Binding Sites List in 3rui
Zinc binding site 1 out of 1 in the Crystal Structure of ATG7C-ATG8 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of ATG7C-ATG8 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1

b:26.8
occ:1.00
SG A:CYS488 2.3 25.7 1.0
SG A:CYS572 2.3 27.3 1.0
SG A:CYS569 2.4 25.8 1.0
SG A:CYS485 2.4 24.9 1.0
CB A:CYS569 3.2 27.4 1.0
CB A:CYS572 3.4 26.2 1.0
CB A:CYS485 3.4 24.2 1.0
CB A:CYS488 3.6 24.3 1.0
N A:CYS488 3.6 23.9 1.0
N A:CYS485 3.7 28.3 1.0
CA A:CYS488 3.9 25.8 1.0
N A:CYS572 3.9 27.1 1.0
CA A:CYS485 4.0 24.2 1.0
C A:PHE487 4.2 26.8 1.0
CA A:CYS572 4.2 27.3 1.0
C A:CYS485 4.4 23.3 1.0
O A:CYS485 4.4 24.9 1.0
O A:HOH28 4.5 30.0 1.0
N A:PHE487 4.5 24.4 1.0
CA A:CYS569 4.6 24.0 1.0
CB A:PHE487 4.6 23.9 1.0
CA A:PHE487 4.7 22.7 1.0
O A:HOH40 4.8 27.8 1.0
CB A:ALA571 4.8 23.1 1.0
C A:GLY484 4.9 27.9 1.0
O A:PHE487 4.9 25.1 1.0
C A:CYS572 4.9 29.2 1.0
N A:TYR566 4.9 28.4 1.0
C A:ALA571 5.0 27.3 1.0

Reference:

S.B.Hong, B.W.Kim, K.E.Lee, S.W.Kim, H.Jeon, J.Kim, H.K.Song. Insights Into Noncanonical E1 Enzyme Activation From the Structure of Autophagic E1 ATG7 with ATG8. Nat.Struct.Mol.Biol. V. 18 1323 2011.
ISSN: ISSN 1545-9993
PubMed: 22056771
DOI: 10.1038/NSMB.2165
Page generated: Wed Dec 16 04:48:03 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy