Zinc in PDB 3rjn: Horse Heart Myoglobin: D44K/D60K Mutant with Zinc (II) - Deuteroporphyrin Dimethyl Ester

The structure of Horse Heart Myoglobin: D44K/D60K Mutant with Zinc (II) - Deuteroporphyrin Dimethyl Ester, PDB code: 3rjn was solved by S.M.Smith, A.C.Rosenzweig, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	56.17 / 1.90
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	42.814, 30.537, 56.674, 90.00, 97.64, 90.00
R / Rfree (%)	17.5 / 22.8

The binding sites of Zinc atom in the Horse Heart Myoglobin: D44K/D60K Mutant with Zinc (II) - Deuteroporphyrin Dimethyl Ester (pdb code 3rjn). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Horse Heart Myoglobin: D44K/D60K Mutant with Zinc (II) - Deuteroporphyrin Dimethyl Ester, PDB code: 3rjn:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Horse Heart Myoglobin: D44K/D60K Mutant with Zinc (II) - Deuteroporphyrin Dimethyl Ester


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Horse Heart Myoglobin: D44K/D60K Mutant with Zinc (II) - Deuteroporphyrin Dimethyl Ester within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn201 b:14.2 occ:0.60 ZN B:HE5201 0.0 14.2 0.6 ZN B:HE5201 0.5 6.0 0.4 NC B:HE5201 1.8 3.1 0.4 ND B:HE5201 1.9 3.9 0.4 NE2 B:HIS93 2.1 9.9 1.0 NC B:HE5201 2.1 12.4 0.6 NA B:HE5201 2.2 13.8 0.6 NB B:HE5201 2.2 14.9 0.6 ND B:HE5201 2.2 12.9 0.6 NB B:HE5201 2.5 3.5 0.4 NA B:HE5201 2.6 5.3 0.4 C4C B:HE5201 2.6 3.8 0.4 C1C B:HE5201 2.9 3.1 0.4 C1D B:HE5201 2.9 2.5 0.4 CE1 B:HIS93 2.9 13.1 1.0 C1A B:HE5201 3.1 14.8 0.6 C4C B:HE5201 3.1 15.6 0.6 C1C B:HE5201 3.1 15.5 0.6 C4D B:HE5201 3.1 4.1 0.4 C4B B:HE5201 3.1 14.2 0.6 C4D B:HE5201 3.2 13.8 0.6 C1B B:HE5201 3.2 13.4 0.6 CHD B:HE5201 3.2 5.7 0.4 C4A B:HE5201 3.2 14.2 0.6 CD2 B:HIS93 3.2 11.9 1.0 C1D B:HE5201 3.2 14.1 0.6 C4B B:HE5201 3.3 5.5 0.4 C1B B:HE5201 3.5 4.2 0.4 CHA B:HE5201 3.5 13.1 0.6 C1A B:HE5201 3.5 5.9 0.4 CHC B:HE5201 3.6 3.9 0.4 CHC B:HE5201 3.7 17.2 0.6 CHB B:HE5201 3.7 14.9 0.6 C4A B:HE5201 3.7 5.8 0.4 CHD B:HE5201 3.7 13.9 0.6 CHA B:HE5201 3.7 3.8 0.4 C3C B:HE5201 3.8 2.0 0.4 C2C B:HE5201 4.0 2.5 0.4 CHB B:HE5201 4.0 5.1 0.4 C2D B:HE5201 4.1 4.9 0.4 ND1 B:HIS93 4.1 13.7 1.0 C3D B:HE5201 4.2 4.9 0.4 C2A B:HE5201 4.2 16.2 0.6 C3A B:HE5201 4.3 17.0 0.6 C3C B:HE5201 4.3 15.0 0.6 CG B:HIS93 4.3 10.8 1.0 C3B B:HE5201 4.3 13.1 0.6 C3D B:HE5201 4.3 14.8 0.6 C2C B:HE5201 4.3 16.8 0.6 C2B B:HE5201 4.4 13.7 0.6 C2D B:HE5201 4.4 14.9 0.6 CG2 B:VAL68 4.5 10.7 1.0 C3B B:HE5201 4.5 4.4 0.4 C2B B:HE5201 4.6 2.5 0.4 NE2 B:HIS64 4.7 18.5 1.0 C2A B:HE5201 4.8 5.7 0.4 C3A B:HE5201 4.8 6.5 0.4

Zinc binding site 2 out of 2 in the Horse Heart Myoglobin: D44K/D60K Mutant with Zinc (II) - Deuteroporphyrin Dimethyl Ester


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Horse Heart Myoglobin: D44K/D60K Mutant with Zinc (II) - Deuteroporphyrin Dimethyl Ester within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn201 b:6.0 occ:0.40 ZN B:HE5201 0.0 6.0 0.4 ZN B:HE5201 0.5 14.2 0.6 ND B:HE5201 1.8 12.9 0.6 NC B:HE5201 1.9 12.4 0.6 NB B:HE5201 2.1 3.5 0.4 NC B:HE5201 2.2 3.1 0.4 NA B:HE5201 2.2 5.3 0.4 NE2 B:HIS93 2.2 9.9 1.0 ND B:HE5201 2.2 3.9 0.4 NA B:HE5201 2.5 13.8 0.6 NB B:HE5201 2.6 14.9 0.6 C4C B:HE5201 2.7 15.6 0.6 C1D B:HE5201 2.8 14.1 0.6 C4D B:HE5201 2.9 13.8 0.6 C1B B:HE5201 3.1 4.2 0.4 C1C B:HE5201 3.1 15.5 0.6 C4B B:HE5201 3.1 5.5 0.4 CE1 B:HIS93 3.1 13.1 1.0 C4C B:HE5201 3.1 3.8 0.4 C1C B:HE5201 3.1 3.1 0.4 C4A B:HE5201 3.2 5.8 0.4 CD2 B:HIS93 3.2 11.9 1.0 CHD B:HE5201 3.2 13.9 0.6 C4D B:HE5201 3.2 4.1 0.4 C1A B:HE5201 3.3 14.8 0.6 C1A B:HE5201 3.3 5.9 0.4 C1D B:HE5201 3.3 2.5 0.4 CHA B:HE5201 3.4 13.1 0.6 C4B B:HE5201 3.5 14.2 0.6 CHB B:HE5201 3.5 5.1 0.4 C4A B:HE5201 3.6 14.2 0.6 CHC B:HE5201 3.6 3.9 0.4 CHA B:HE5201 3.6 3.8 0.4 C1B B:HE5201 3.6 13.4 0.6 CHD B:HE5201 3.7 5.7 0.4 CHC B:HE5201 3.8 17.2 0.6 C2D B:HE5201 3.9 14.9 0.6 C3D B:HE5201 3.9 14.8 0.6 C3C B:HE5201 4.0 15.0 0.6 CHB B:HE5201 4.1 14.9 0.6 C2C B:HE5201 4.2 16.8 0.6 C3B B:HE5201 4.2 4.4 0.4 ND1 B:HIS93 4.2 13.7 1.0 C2B B:HE5201 4.3 2.5 0.4 C3C B:HE5201 4.3 2.0 0.4 C2C B:HE5201 4.3 2.5 0.4 CG B:HIS93 4.3 10.8 1.0 C3A B:HE5201 4.4 6.5 0.4 C2A B:HE5201 4.4 5.7 0.4 C3D B:HE5201 4.4 4.9 0.4 C2D B:HE5201 4.5 4.9 0.4 C2A B:HE5201 4.5 16.2 0.6 NE2 B:HIS64 4.6 18.5 1.0 C3A B:HE5201 4.6 17.0 0.6 CG2 B:VAL68 4.6 10.7 1.0 C3B B:HE5201 4.7 13.1 0.6 C2B B:HE5201 4.8 13.7 0.6 CD2 B:HIS97 4.9 15.1 1.0 CE1 B:HIS64 5.0 21.7 1.0

A.K.Knutson, S.M.Smith, A.C.Rosenzweig, B.M.Hoffman. Horse Heart Myoglobin: D44K/D60K Mutant with Zinc (II) -Deuteroporphyrin Dimethyl Ester To Be Published.