Zinc in PDB 3rgy: Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Lipopolysaccharide at 2.0 A Resolution

The structure of Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Lipopolysaccharide at 2.0 A Resolution, PDB code: 3rgy was solved by P.K.Shukla, M.Sinha, P.Kaur, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.95 / 2.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	61.929, 49.931, 65.062, 90.00, 106.86, 90.00
R / Rfree (%)	19.5 / 22.1

The structure of Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Lipopolysaccharide at 2.0 A Resolution also contains other interesting chemical elements:

Iron

(Fe)

1 atom

The binding sites of Zinc atom in the Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Lipopolysaccharide at 2.0 A Resolution (pdb code 3rgy). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Lipopolysaccharide at 2.0 A Resolution, PDB code: 3rgy:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Lipopolysaccharide at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Lipopolysaccharide at 2.0 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn81 b:33.3 occ:1.00 OE2 A:GLU659 2.3 23.2 1.0 OE1 A:GLU659 2.3 22.5 1.0 CD A:GLU659 2.6 23.2 1.0 O A:GLY653 3.7 33.6 1.0 CG A:GLU659 4.1 23.4 1.0 C6 A:LP5688 4.3 51.5 0.6 O A:ARG654 4.4 28.4 1.0 O A:HOH335 4.5 74.5 1.0 CA A:PRO655 4.5 26.2 1.0 O4 A:LP5688 4.6 50.7 0.6 N A:THR656 4.8 23.9 1.0 CB A:GLU659 4.8 24.2 1.0 C A:ARG654 4.9 29.5 1.0 C A:GLY653 4.9 33.3 1.0 CG2 A:THR656 5.0 23.5 1.0 N A:PRO655 5.0 27.3 1.0 C5 A:LP5688 5.0 51.0 0.6

Zinc binding site 2 out of 2 in the Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Lipopolysaccharide at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Lipopolysaccharide at 2.0 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn82 b:31.4 occ:1.00 NE2 A:HIS588 2.2 24.0 1.0 CE1 A:HIS588 3.1 23.4 1.0 CD2 A:HIS588 3.2 23.9 1.0 CG2 A:VAL591 4.1 24.6 1.0 ND1 A:HIS588 4.2 24.3 1.0 C24 A:LP5688 4.3 38.9 0.6 CG A:HIS588 4.3 23.7 1.0 C25 A:LP5688 4.4 38.6 0.6 C26 A:LP5688 4.7 37.4 0.6 O A:HOH7 4.8 22.4 1.0 O A:HOH87 4.9 56.1 1.0

P.K.Shukla, M.Sinha, P.Kaur, S.Sharma, T.P.Singh. Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Lipopolysaccharide at 2.0 A Resolution To Be Published.