Zinc in PDB 3r3l: Structure of Np Protein From Lassa Av Strain

The structure of Structure of Np Protein From Lassa Av Strain, PDB code: 3r3l was solved by M.Perbandt, L.Brunotte, S.Gunther, C.Betzel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.45
Space group	P 3
Cell size a, b, c (Å), α, β, γ (°)	176.320, 176.320, 56.580, 90.00, 90.00, 120.00
R / Rfree (%)	18.4 / 21.9

The structure of Structure of Np Protein From Lassa Av Strain also contains other interesting chemical elements:

Manganese

(Mn)

5 atoms

The binding sites of Zinc atom in the Structure of Np Protein From Lassa Av Strain (pdb code 3r3l). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Structure of Np Protein From Lassa Av Strain, PDB code: 3r3l:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Structure of Np Protein From Lassa Av Strain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Np Protein From Lassa Av Strain within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn585 b:20.0 occ:1.00 OE2 A:GLU399 2.0 20.0 1.0 NE2 A:HIS509 2.1 20.0 1.0 SG A:CYS506 2.2 20.0 1.0 SG A:CYS529 2.3 20.0 1.0 CD2 A:HIS509 2.8 20.0 1.0 CD A:GLU399 2.9 20.0 1.0 OE1 A:GLU399 3.2 20.0 1.0 CE1 A:HIS509 3.2 20.0 1.0 CB A:CYS529 3.3 20.0 1.0 CB A:CYS506 3.4 20.0 1.0 NE2 A:HIS412 3.8 20.0 1.0 CA A:CYS529 3.8 20.0 1.0 CG A:HIS509 4.0 20.0 1.0 ND1 A:HIS509 4.2 20.0 1.0 CG A:GLU399 4.2 20.0 1.0 CE1 A:HIS412 4.3 20.0 1.0 N A:ALA530 4.3 20.0 1.0 CE1 A:PHE414 4.4 20.0 1.0 C A:CYS529 4.5 20.0 1.0 CZ A:PHE414 4.8 20.0 1.0 CA A:CYS506 4.8 20.0 1.0 CB A:MET508 4.9 20.0 1.0 CD2 A:HIS412 5.0 20.0 1.0

Zinc binding site 2 out of 3 in the Structure of Np Protein From Lassa Av Strain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Np Protein From Lassa Av Strain within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn585 b:20.0 occ:1.00 OE2 B:GLU399 2.0 20.0 1.0 NE2 B:HIS509 2.1 20.0 1.0 SG B:CYS529 2.2 20.0 1.0 SG B:CYS506 2.2 20.0 1.0 CD2 B:HIS509 3.0 20.0 1.0 CD B:GLU399 3.0 20.0 1.0 CB B:CYS529 3.1 20.0 1.0 CE1 B:HIS509 3.1 20.0 1.0 OE1 B:GLU399 3.2 20.0 1.0 CB B:CYS506 3.3 20.0 1.0 CA B:CYS529 3.6 20.0 1.0 NE2 B:HIS412 3.8 20.0 1.0 CG B:HIS509 4.1 20.0 1.0 N B:ALA530 4.1 20.0 1.0 ND1 B:HIS509 4.2 20.0 1.0 CE1 B:HIS412 4.2 20.0 1.0 CG B:GLU399 4.3 20.0 1.0 C B:CYS529 4.3 20.0 1.0 CE1 B:PHE414 4.5 20.0 1.0 CB B:MET508 4.6 20.0 1.0 CA B:CYS506 4.7 20.0 1.0 CZ B:PHE414 4.7 20.0 1.0 N B:LEU531 4.8 20.0 1.0 N B:CYS529 4.9 20.0 1.0 CD2 B:HIS412 4.9 20.0 1.0

Zinc binding site 3 out of 3 in the Structure of Np Protein From Lassa Av Strain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of Np Protein From Lassa Av Strain within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn584 b:20.0 occ:1.00 OE2 C:GLU399 2.0 20.0 1.0 NE2 C:HIS509 2.1 20.0 1.0 SG C:CYS506 2.2 20.0 1.0 SG C:CYS529 2.3 20.0 1.0 CD2 C:HIS509 2.8 20.0 1.0 CD C:GLU399 3.0 20.0 1.0 CB C:CYS529 3.2 20.0 1.0 CE1 C:HIS509 3.2 20.0 1.0 CB C:CYS506 3.4 20.0 1.0 OE1 C:GLU399 3.4 20.0 1.0 NE2 C:HIS412 3.8 20.0 1.0 CA C:CYS529 3.9 20.0 1.0 CG C:HIS509 4.0 20.0 1.0 ND1 C:HIS509 4.2 20.0 1.0 CE1 C:HIS412 4.2 20.0 1.0 CG C:GLU399 4.4 20.0 1.0 CE1 C:PHE414 4.5 20.0 1.0 N C:ALA530 4.5 20.0 1.0 C C:CYS529 4.6 20.0 1.0 CB C:MET508 4.7 20.0 1.0 CA C:CYS506 4.8 20.0 1.0

M.Perbandt, L.Brunotte, S.Gunther, C.Betzel. Structure of Np Protein of Lassa Av Strain To Be Published.