Zinc in PDB 3q6v: Crystal Structure of Serratia Fonticola Sfh-I: Glycerol Complex

All present enzymatic activity of Crystal Structure of Serratia Fonticola Sfh-I: Glycerol Complex:
3.5.2.6;

The structure of Crystal Structure of Serratia Fonticola Sfh-I: Glycerol Complex, PDB code: 3q6v was solved by F.Fonseca, M.J.Saavedra, A.Correia, J.Spencer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	26.23 / 1.37
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	32.830, 87.280, 72.570, 90.00, 90.85, 90.00
R / Rfree (%)	16.3 / 19.6

The binding sites of Zinc atom in the Crystal Structure of Serratia Fonticola Sfh-I: Glycerol Complex (pdb code 3q6v). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Serratia Fonticola Sfh-I: Glycerol Complex, PDB code: 3q6v:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Serratia Fonticola Sfh-I: Glycerol Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Serratia Fonticola Sfh-I: Glycerol Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn2 b:11.3 occ:1.00 OD2 A:ASP120 1.9 13.8 1.0 O3 A:GOL1 1.9 24.3 1.0 NE2 A:HIS263 2.1 12.3 1.0 SG A:CYS221 2.3 14.1 1.0 CG A:ASP120 2.9 12.1 1.0 CE1 A:HIS263 2.9 13.2 1.0 C3 A:GOL1 3.0 28.8 1.0 CD2 A:HIS263 3.1 13.0 1.0 CB A:CYS221 3.2 14.2 1.0 C1 A:GOL1 3.2 26.1 1.0 O1 A:GOL1 3.3 18.7 1.0 OD1 A:ASP120 3.3 16.1 1.0 C2 A:GOL1 3.8 27.5 1.0 NH2 A:ARG121 3.8 14.4 1.0 ND1 A:HIS263 4.1 12.3 1.0 CG A:HIS263 4.2 11.8 1.0 CB A:ASP120 4.2 10.7 1.0 CA A:CYS221 4.3 13.7 1.0 NE2 A:HIS196 4.3 16.0 1.0 O A:HOH283 4.4 23.9 1.0 O A:HOH281 4.4 26.9 1.0 CZ A:ARG121 4.4 11.6 1.0 NE A:ARG121 4.5 11.0 1.0 O2 A:GOL1 4.6 28.9 1.0 CE1 A:HIS196 4.7 14.3 1.0 N A:CYS221 5.0 12.8 1.0 O A:HOH391 5.0 30.0 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Serratia Fonticola Sfh-I: Glycerol Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Serratia Fonticola Sfh-I: Glycerol Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn2 b:10.2 occ:1.00 O1 B:GOL1 1.9 26.2 1.0 OD2 B:ASP120 1.9 15.0 1.0 NE2 B:HIS263 2.0 11.3 1.0 SG B:CYS221 2.3 13.2 1.0 CE1 B:HIS263 2.9 11.5 1.0 C1 B:GOL1 2.9 27.5 1.0 CG B:ASP120 2.9 11.0 1.0 C3 B:GOL1 3.1 23.9 1.0 CD2 B:HIS263 3.2 11.5 1.0 CB B:CYS221 3.2 11.5 1.0 OD1 B:ASP120 3.3 14.0 1.0 O3 B:GOL1 3.3 14.3 1.0 C2 B:GOL1 3.6 26.5 1.0 NH2 B:ARG121 3.8 12.5 1.0 ND1 B:HIS263 4.1 10.1 1.0 CG B:HIS263 4.2 10.9 1.0 CB B:ASP120 4.3 9.7 1.0 CA B:CYS221 4.3 11.5 1.0 NE2 B:HIS196 4.3 15.4 1.0 CZ B:ARG121 4.4 9.0 1.0 O B:HOH353 4.4 22.3 1.0 NE B:ARG121 4.4 9.3 1.0 O2 B:GOL1 4.4 27.2 1.0 O B:HOH422 4.6 17.1 1.0 CE1 B:HIS196 4.6 13.8 1.0 O B:HOH504 4.7 27.3 1.0

F.Fonseca, E.H.Bromley, M.J.Saavedra, A.Correia, J.Spencer. Crystal Structure of Serratia Fonticola Sfh-I: Activation of the Nucleophile in Mono-Zinc Metallo-Beta-Lactamases. J.Mol.Biol. V. 411 951 2011.
ISSN: ESSN 1089-8638
PubMed: 21762699
DOI: 10.1016/J.JMB.2011.06.043