Atomistry » Zinc » PDB 3p3j-3pfq » 3p7q
Atomistry »
  Zinc »
    PDB 3p3j-3pfq »
      3p7q »

Zinc in PDB 3p7q: Radiation Damage Study of Thermolysin - 100K Structure B (2.5 Mgy)

Enzymatic activity of Radiation Damage Study of Thermolysin - 100K Structure B (2.5 Mgy)

All present enzymatic activity of Radiation Damage Study of Thermolysin - 100K Structure B (2.5 Mgy):
3.4.24.27;

Protein crystallography data

The structure of Radiation Damage Study of Thermolysin - 100K Structure B (2.5 Mgy), PDB code: 3p7q was solved by D.H.Juers, M.Weik, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.58 / 2.20
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 93.260, 93.260, 128.690, 90.00, 90.00, 120.00
R / Rfree (%) 14.6 / 20.5

Other elements in 3p7q:

The structure of Radiation Damage Study of Thermolysin - 100K Structure B (2.5 Mgy) also contains other interesting chemical elements:

Calcium (Ca) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Radiation Damage Study of Thermolysin - 100K Structure B (2.5 Mgy) (pdb code 3p7q). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Radiation Damage Study of Thermolysin - 100K Structure B (2.5 Mgy), PDB code: 3p7q:

Zinc binding site 1 out of 1 in 3p7q

Go back to Zinc Binding Sites List in 3p7q
Zinc binding site 1 out of 1 in the Radiation Damage Study of Thermolysin - 100K Structure B (2.5 Mgy)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Radiation Damage Study of Thermolysin - 100K Structure B (2.5 Mgy) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn321

b:9.4
occ:1.00
 O E:HOH363 1.8 12.4 1.0
OE2 E:GLU166 2.0 7.7 1.0
NE2 E:HIS142 2.0 8.1 1.0
NE2 E:HIS146 2.0 8.9 1.0
CD E:GLU166 2.7 13.2 1.0
OE1 E:GLU166 2.9 15.3 1.0
CD2 E:HIS142 2.9 5.6 1.0
CE1 E:HIS146 3.0 7.7 1.0
CE1 E:HIS142 3.1 8.7 1.0
CD2 E:HIS146 3.1 7.7 1.0
OE2 E:GLU143 3.9 21.5 1.0
OH E:TYR157 4.0 18.6 1.0
ND1 E:HIS146 4.1 8.1 1.0
CG E:HIS142 4.1 6.7 1.0
ND1 E:HIS142 4.1 6.6 1.0
CG E:GLU166 4.2 10.5 1.0
CG E:HIS146 4.2 7.3 1.0
O E:HOH574 4.2 30.5 1.0
OE1 E:GLU143 4.3 17.9 1.0
NE2 E:HIS231 4.3 17.9 1.0
CD E:GLU143 4.4 16.7 1.0
CB E:SER169 4.5 6.4 1.0
OG E:SER169 4.7 9.1 1.0
O E:HOH350 4.7 13.8 1.0
CD2 E:HIS231 4.8 15.7 1.0
CA E:GLU166 4.8 8.1 1.0
CZ E:TYR157 5.0 17.8 1.0
CB E:GLU166 5.0 7.8 1.0
O E:HOH618 5.0 34.0 1.0

Reference:

D.H.Juers, M.Weik. Radiation Damage Study of Thermolysin - 100K Structure B (2.5 Mgy) To Be Published.
Page generated: Sat Oct 26 11:20:31 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy