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Zinc in PDB 3p7p: Radiation Damage Study of Thermolysin - 100K Structure A (0.1 Mgy)

Enzymatic activity of Radiation Damage Study of Thermolysin - 100K Structure A (0.1 Mgy)

All present enzymatic activity of Radiation Damage Study of Thermolysin - 100K Structure A (0.1 Mgy):
3.4.24.27;

Protein crystallography data

The structure of Radiation Damage Study of Thermolysin - 100K Structure A (0.1 Mgy), PDB code: 3p7p was solved by D.H.Juers, M.Weik, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 80.85 / 2.20
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 93.220, 93.220, 128.610, 90.00, 90.00, 120.00
R / Rfree (%) 14.9 / 21.1

Other elements in 3p7p:

The structure of Radiation Damage Study of Thermolysin - 100K Structure A (0.1 Mgy) also contains other interesting chemical elements:

Calcium (Ca) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Radiation Damage Study of Thermolysin - 100K Structure A (0.1 Mgy) (pdb code 3p7p). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Radiation Damage Study of Thermolysin - 100K Structure A (0.1 Mgy), PDB code: 3p7p:

Zinc binding site 1 out of 1 in 3p7p

Go back to Zinc Binding Sites List in 3p7p
Zinc binding site 1 out of 1 in the Radiation Damage Study of Thermolysin - 100K Structure A (0.1 Mgy)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Radiation Damage Study of Thermolysin - 100K Structure A (0.1 Mgy) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn321

b:7.8
occ:1.00
 O E:HOH377 1.8 10.9 1.0
OE2 E:GLU166 2.0 6.0 1.0
NE2 E:HIS142 2.0 6.7 1.0
NE2 E:HIS146 2.0 8.6 1.0
CD E:GLU166 2.8 10.7 1.0
CE1 E:HIS146 2.9 8.8 1.0
CD2 E:HIS142 2.9 4.2 1.0
OE1 E:GLU166 3.0 12.0 1.0
CE1 E:HIS142 3.0 6.8 1.0
CD2 E:HIS146 3.1 7.3 1.0
OH E:TYR157 3.9 16.2 1.0
OE2 E:GLU143 4.0 17.6 1.0
O E:HOH585 4.0 26.0 1.0
ND1 E:HIS146 4.1 8.3 1.0
CG E:HIS142 4.1 5.1 1.0
ND1 E:HIS142 4.1 4.5 1.0
CG E:HIS146 4.2 7.6 1.0
CG E:GLU166 4.2 9.1 1.0
OE1 E:GLU143 4.3 13.6 1.0
NE2 E:HIS231 4.4 15.7 1.0
CD E:GLU143 4.4 13.5 1.0
CB E:SER169 4.4 5.2 1.0
OG E:SER169 4.7 8.0 1.0
O E:HOH364 4.8 13.4 1.0
CD2 E:HIS231 4.8 13.8 1.0
CA E:GLU166 4.8 7.1 1.0
CZ E:TYR157 4.9 16.0 1.0
CE1 E:TYR157 5.0 17.1 1.0

Reference:

D.H.Juers, M.Weik. Radiation Damage Study of Thermolysin - 100K Structure A (0.1 Mgy) To Be Published.
Page generated: Sat Oct 26 11:20:31 2024

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