Atomistry » Zinc » PDB 3oxf-3p3h » 3p33
Atomistry »
  Zinc »
    PDB 3oxf-3p3h »
      3p33 »

Zinc in PDB 3p33: Insulin Fibrillation Is the Janus Face of Induced Fit. A Chiral Clamp Stabilizes the Native State at the Expense of Activity

Protein crystallography data

The structure of Insulin Fibrillation Is the Janus Face of Induced Fit. A Chiral Clamp Stabilizes the Native State at the Expense of Activity, PDB code: 3p33 was solved by Q.X.Hua, Z.L.Wan, K.Huang, S.Q.Hu, N.F.Phillip, W.H.Jia, J.Whittingham, G.G.Dodson, P.G.Katsoyannis, M.A.Weiss, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 51.11 / 2.30
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 77.900, 77.900, 78.300, 90.00, 90.00, 120.00
R / Rfree (%) 21.4 / 29.9

Other elements in 3p33:

The structure of Insulin Fibrillation Is the Janus Face of Induced Fit. A Chiral Clamp Stabilizes the Native State at the Expense of Activity also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Insulin Fibrillation Is the Janus Face of Induced Fit. A Chiral Clamp Stabilizes the Native State at the Expense of Activity (pdb code 3p33). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Insulin Fibrillation Is the Janus Face of Induced Fit. A Chiral Clamp Stabilizes the Native State at the Expense of Activity, PDB code: 3p33:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 3p33

Go back to Zinc Binding Sites List in 3p33
Zinc binding site 1 out of 4 in the Insulin Fibrillation Is the Janus Face of Induced Fit. A Chiral Clamp Stabilizes the Native State at the Expense of Activity


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Insulin Fibrillation Is the Janus Face of Induced Fit. A Chiral Clamp Stabilizes the Native State at the Expense of Activity within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn31

b:2.9
occ:0.33
NE2 B:HIS10 2.1 29.3 1.0
CL B:CL32 2.2 3.5 0.3
CE1 B:HIS10 2.9 28.0 1.0
CD2 B:HIS10 3.2 28.0 1.0
ND1 B:HIS10 4.1 32.8 1.0
CG B:HIS10 4.2 28.2 1.0
O B:LEU6 4.7 25.1 1.0

Zinc binding site 2 out of 4 in 3p33

Go back to Zinc Binding Sites List in 3p33
Zinc binding site 2 out of 4 in the Insulin Fibrillation Is the Janus Face of Induced Fit. A Chiral Clamp Stabilizes the Native State at the Expense of Activity


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Insulin Fibrillation Is the Janus Face of Induced Fit. A Chiral Clamp Stabilizes the Native State at the Expense of Activity within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn31

b:6.8
occ:0.33
NE2 D:HIS10 2.1 29.4 1.0
CL D:CL32 2.3 5.2 0.3
CE1 D:HIS10 2.7 29.1 1.0
CD2 D:HIS10 3.3 30.3 1.0
ND1 D:HIS10 3.9 31.2 1.0
CG D:HIS10 4.3 25.4 1.0
O D:LEU6 4.8 34.5 1.0

Zinc binding site 3 out of 4 in 3p33

Go back to Zinc Binding Sites List in 3p33
Zinc binding site 3 out of 4 in the Insulin Fibrillation Is the Janus Face of Induced Fit. A Chiral Clamp Stabilizes the Native State at the Expense of Activity


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Insulin Fibrillation Is the Janus Face of Induced Fit. A Chiral Clamp Stabilizes the Native State at the Expense of Activity within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn31

b:5.4
occ:0.33
NE2 F:HIS10 2.0 38.4 1.0
CL F:CL32 2.3 36.2 0.3
CD2 F:HIS10 2.8 34.7 1.0
CE1 F:HIS10 3.1 36.2 1.0
CG F:HIS10 4.0 30.1 1.0
ND1 F:HIS10 4.1 33.6 1.0
O F:HOH47 4.5 62.9 1.0
O F:LEU6 4.7 39.0 1.0

Zinc binding site 4 out of 4 in 3p33

Go back to Zinc Binding Sites List in 3p33
Zinc binding site 4 out of 4 in the Insulin Fibrillation Is the Janus Face of Induced Fit. A Chiral Clamp Stabilizes the Native State at the Expense of Activity


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Insulin Fibrillation Is the Janus Face of Induced Fit. A Chiral Clamp Stabilizes the Native State at the Expense of Activity within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Zn31

b:6.5
occ:0.33
NE2 H:HIS10 2.0 31.1 1.0
CL H:CL32 2.3 10.6 0.3
CE1 H:HIS10 2.9 35.3 1.0
CD2 H:HIS10 3.1 31.2 1.0
ND1 H:HIS10 4.1 34.7 1.0
CG H:HIS10 4.2 32.6 1.0
O H:LEU6 4.7 30.1 1.0

Reference:

Q.X.Hua, Z.L.Wan, K.Huang, S.Q.Hu, N.F.Phillip, W.H.Jia, J.Whittingham, G.G.Dodson, P.G.Katsoyannis, M.A.Weiss. Insulin Fibrillation Is the Janus Face of Induced Fit. A Chiral Clamp Stabilizes the Native State at the Expense of Activity To Be Published.
Page generated: Sat Oct 26 11:17:31 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy