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Zinc in PDB 3p2n: Discovery and Structural Characterization of A New Glycoside Hydrolase Family Abundant in Coastal Waters That Was Annotated As 'Hypothetical Protein'

Enzymatic activity of Discovery and Structural Characterization of A New Glycoside Hydrolase Family Abundant in Coastal Waters That Was Annotated As 'Hypothetical Protein'

All present enzymatic activity of Discovery and Structural Characterization of A New Glycoside Hydrolase Family Abundant in Coastal Waters That Was Annotated As 'Hypothetical Protein':
3.2.1.159;

Protein crystallography data

The structure of Discovery and Structural Characterization of A New Glycoside Hydrolase Family Abundant in Coastal Waters That Was Annotated As 'Hypothetical Protein', PDB code: 3p2n was solved by E.Rebuffet, T.Barbeyron, M.Czjzek, G.Michel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.00 / 1.95
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 72.990, 96.803, 126.836, 90.00, 90.00, 90.00
R / Rfree (%) 17 / 21.3

Other elements in 3p2n:

The structure of Discovery and Structural Characterization of A New Glycoside Hydrolase Family Abundant in Coastal Waters That Was Annotated As 'Hypothetical Protein' also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Discovery and Structural Characterization of A New Glycoside Hydrolase Family Abundant in Coastal Waters That Was Annotated As 'Hypothetical Protein' (pdb code 3p2n). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Discovery and Structural Characterization of A New Glycoside Hydrolase Family Abundant in Coastal Waters That Was Annotated As 'Hypothetical Protein', PDB code: 3p2n:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3p2n

Go back to Zinc Binding Sites List in 3p2n
Zinc binding site 1 out of 2 in the Discovery and Structural Characterization of A New Glycoside Hydrolase Family Abundant in Coastal Waters That Was Annotated As 'Hypothetical Protein'


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Discovery and Structural Characterization of A New Glycoside Hydrolase Family Abundant in Coastal Waters That Was Annotated As 'Hypothetical Protein' within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn900

b:29.9
occ:1.00
 O A:HOH581 2.2 17.2 1.0
O A:HOH613 2.2 15.1 1.0
O A:HOH717 2.2 12.4 1.0
O A:HOH647 2.3 12.6 1.0
O A:HOH578 2.4 18.6 1.0
O A:HOH554 2.4 12.8 1.0
O A:PRO98 3.8 19.1 1.0
OD2 A:ASP252 4.0 18.4 1.0
O A:HOH424 4.0 24.9 1.0
O A:ALA356 4.2 15.9 1.0
CG A:ASP252 4.3 20.3 1.0
O A:ASP97 4.3 15.0 1.0
OD1 A:ASP252 4.3 20.0 1.0
OE2 A:GLU174 4.3 17.4 1.0
O A:VAL173 4.4 13.4 1.0
OD1 A:ASP97 4.4 17.2 1.0
C A:ASP97 4.4 14.6 1.0
CG2 A:THR172 4.4 9.3 1.0
O A:HOH634 4.5 15.9 1.0
O A:HOH453 4.5 16.4 1.0
CB A:ALA356 4.5 15.3 1.0
O A:ILE357 4.6 12.3 1.0
CB A:ASP97 4.6 14.6 1.0
C A:ALA356 4.6 15.1 1.0
C A:PRO98 4.6 16.0 1.0
CA A:ASP97 4.7 15.2 1.0
CA A:ALA356 4.7 16.0 1.0
CG A:ASP97 5.0 15.3 1.0
N A:PRO98 5.0 15.7 1.0

Zinc binding site 2 out of 2 in 3p2n

Go back to Zinc Binding Sites List in 3p2n
Zinc binding site 2 out of 2 in the Discovery and Structural Characterization of A New Glycoside Hydrolase Family Abundant in Coastal Waters That Was Annotated As 'Hypothetical Protein'


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Discovery and Structural Characterization of A New Glycoside Hydrolase Family Abundant in Coastal Waters That Was Annotated As 'Hypothetical Protein' within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn900

b:27.5
occ:1.00
 O B:HOH718 2.2 15.2 1.0
O B:HOH717 2.2 10.8 1.0
O B:HOH719 2.2 16.4 1.0
O B:HOH715 2.2 10.4 1.0
O B:HOH716 2.3 13.5 1.0
O B:HOH720 2.3 10.6 1.0
O B:PRO98 3.8 15.7 1.0
O B:HOH459 3.9 12.5 1.0
O B:ILE357 4.1 14.2 1.0
O B:ALA356 4.1 11.5 1.0
O B:HOH551 4.3 12.4 1.0
OE2 B:GLU174 4.4 13.5 1.0
OD1 B:ASP252 4.4 17.4 1.0
O B:VAL173 4.4 13.0 1.0
OD1 B:ASP97 4.4 12.3 1.0
O B:ASP97 4.4 14.2 1.0
C B:ALA356 4.5 12.8 1.0
C B:ASP97 4.5 13.7 1.0
CG2 B:THR172 4.5 11.2 1.0
CA B:ALA356 4.6 11.8 1.0
CB B:ASP97 4.6 13.8 1.0
O B:ILE311 4.6 11.5 1.0
C B:PRO98 4.6 14.5 1.0
CB B:ALA356 4.7 11.9 1.0
CA B:ASP97 4.7 13.1 1.0
CG B:GLU174 4.8 9.1 1.0
CD B:GLU174 4.9 12.9 1.0
C B:ILE357 4.9 13.3 1.0
CB B:ASP252 5.0 13.2 1.0

Reference:

E.Rebuffet, A.Groisillier, A.Thompson, A.Jeudy, T.Barbeyron, M.Czjzek, G.Michel. Discovery and Structural Characterization of A Novel Glycosidase Family of Marine Origin. Environ Microbiol V. 13 1253 2011.
ISSN: ISSN 1462-2920
PubMed: 21332624
DOI: 10.1111/J.1462-2920.2011.02426.X
Page generated: Wed Dec 16 04:42:11 2020

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