Zinc in PDB 3omf: Crystal Structure of A Histidine Triad Family Protein From Entamoeba Histolytica, Bound to Amp

The structure of Crystal Structure of A Histidine Triad Family Protein From Entamoeba Histolytica, Bound to Amp, PDB code: 3omf was solved by Ssgcid, Seattle Structural Genomics Center For Infectious Disease(Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.56 / 1.80
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	53.580, 60.630, 67.880, 90.00, 90.00, 90.00
R / Rfree (%)	14.6 / 19.1

The binding sites of Zinc atom in the Crystal Structure of A Histidine Triad Family Protein From Entamoeba Histolytica, Bound to Amp (pdb code 3omf). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of A Histidine Triad Family Protein From Entamoeba Histolytica, Bound to Amp, PDB code: 3omf:

Zinc binding site 1 out of 1 in the Crystal Structure of A Histidine Triad Family Protein From Entamoeba Histolytica, Bound to Amp


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Histidine Triad Family Protein From Entamoeba Histolytica, Bound to Amp within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn114 b:9.3 occ:1.00 ND1 A:HIS47 2.1 6.1 1.0 ND1 A:HIS97 2.1 4.5 1.0 SG A:CYS8 2.2 7.9 1.0 SG A:CYS5 2.3 8.0 1.0 CE1 A:HIS47 3.0 9.1 1.0 CE1 A:HIS97 3.1 4.7 1.0 CB A:CYS5 3.1 10.4 1.0 CG A:HIS97 3.1 5.0 1.0 CG A:HIS47 3.2 8.5 1.0 CB A:CYS8 3.3 7.0 1.0 CB A:HIS97 3.5 6.0 1.0 N A:CYS8 3.5 6.4 1.0 CB A:HIS47 3.6 8.4 1.0 CA A:CYS8 3.8 6.8 1.0 CA A:HIS47 4.0 8.0 1.0 NE2 A:HIS47 4.2 8.1 1.0 NE2 A:HIS97 4.2 4.7 1.0 CD2 A:HIS97 4.2 5.0 1.0 CD2 A:HIS47 4.3 7.2 1.0 C A:PHE7 4.5 5.8 1.0 CA A:CYS5 4.5 10.6 1.0 CA A:HIS97 4.6 5.8 1.0 O A:HOH141 4.6 25.4 1.0 C A:CYS5 4.9 9.7 1.0 CB A:PHE7 4.9 5.6 1.0 O A:CYS5 4.9 9.2 1.0 N A:HIS47 4.9 8.5 1.0 O A:HOH243 4.9 18.9 1.0 N A:PHE7 5.0 6.4 1.0 CA A:PHE7 5.0 5.9 1.0

D.D.Lorimer, R.Choi, A.Abramov, S.Nakazawa Hewitt, A.S.Gardberg, W.C.Van Voorhis, B.L.Staker, P.J.Myler, T.E.Edwards. Structures of A Histidine Triad Family Protein From Entamoeba Histolytica Bound to Sulfate, Amp and Gmp. Acta Crystallogr F Struct V. 71 572 2015BIOL Commun.
PubMed: 25945711
DOI: 10.1107/S2053230X1500237X