Zinc in PDB 3no5: Crystal Structure of A Pfam DUF849 Domain Containing Protein (REUT_A1631) From Ralstonia Eutropha JMP134 at 1.90 A Resolution

The structure of Crystal Structure of A Pfam DUF849 Domain Containing Protein (REUT_A1631) From Ralstonia Eutropha JMP134 at 1.90 A Resolution, PDB code: 3no5 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.96 / 1.90
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	83.181, 81.221, 140.429, 90.00, 103.68, 90.00
R / Rfree (%)	20.6 / 22.4

The binding sites of Zinc atom in the Crystal Structure of A Pfam DUF849 Domain Containing Protein (REUT_A1631) From Ralstonia Eutropha JMP134 at 1.90 A Resolution (pdb code 3no5). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the Crystal Structure of A Pfam DUF849 Domain Containing Protein (REUT_A1631) From Ralstonia Eutropha JMP134 at 1.90 A Resolution, PDB code: 3no5:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in the Crystal Structure of A Pfam DUF849 Domain Containing Protein (REUT_A1631) From Ralstonia Eutropha JMP134 at 1.90 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Pfam DUF849 Domain Containing Protein (REUT_A1631) From Ralstonia Eutropha JMP134 at 1.90 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn275 b:27.5 occ:1.00 OE2 A:GLU229 2.1 29.0 1.0 NE2 A:HIS49 2.1 26.3 1.0 O A:HOH701 2.1 20.1 1.0 O A:HOH1049 2.1 21.3 1.0 NE2 A:HIS47 2.1 25.8 1.0 O A:HOH616 2.2 22.4 1.0 CD2 A:HIS49 3.1 27.1 1.0 CD A:GLU229 3.1 39.3 1.0 CD2 A:HIS47 3.1 26.4 1.0 CE1 A:HIS47 3.1 24.8 1.0 CE1 A:HIS49 3.2 26.7 1.0 OE1 A:GLU229 3.4 24.5 1.0 O A:HOH1352 3.8 40.7 1.0 OG A:SER83 3.9 32.2 1.0 NH2 A:ARG225 4.1 23.1 1.0 O A:HOH1048 4.2 31.4 1.0 CG A:HIS49 4.2 26.4 1.0 CG A:HIS47 4.2 24.2 1.0 ND1 A:HIS47 4.2 25.2 1.0 ND1 A:HIS49 4.3 28.0 1.0 CB A:SER83 4.3 24.7 1.0 O A:HOH1350 4.4 39.1 1.0 CG A:GLU229 4.4 32.1 1.0 NH1 A:ARG225 4.5 25.1 1.0 O A:HOH1084 4.7 50.1 1.0 CZ A:ARG225 4.8 39.2 1.0

Zinc binding site 2 out of 6 in the Crystal Structure of A Pfam DUF849 Domain Containing Protein (REUT_A1631) From Ralstonia Eutropha JMP134 at 1.90 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Pfam DUF849 Domain Containing Protein (REUT_A1631) From Ralstonia Eutropha JMP134 at 1.90 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn275 b:31.9 occ:1.00 NE2 B:HIS47 2.1 28.6 1.0 OE2 B:GLU229 2.1 28.4 1.0 NE2 B:HIS49 2.2 30.5 1.0 O B:HOH867 2.2 24.6 1.0 O B:HOH1015 2.3 23.5 1.0 O B:HOH1223 2.4 36.7 1.0 CE1 B:HIS47 3.1 28.0 1.0 CD2 B:HIS49 3.1 31.4 1.0 CD2 B:HIS47 3.1 29.0 1.0 CD B:GLU229 3.1 38.8 1.0 CE1 B:HIS49 3.2 30.8 1.0 OE1 B:GLU229 3.5 26.9 1.0 OG B:SER83 3.9 35.1 1.0 NH2 B:ARG225 4.1 25.7 1.0 O B:HOH1226 4.1 42.9 1.0 ND1 B:HIS47 4.2 28.5 1.0 CG B:HIS47 4.2 27.0 1.0 CG B:HIS49 4.3 31.3 1.0 CB B:SER83 4.3 30.4 1.0 ND1 B:HIS49 4.3 32.8 1.0 CG B:GLU229 4.5 27.6 1.0 NH1 B:ARG225 4.5 26.8 1.0 CZ B:ARG225 4.8 39.5 1.0

Zinc binding site 3 out of 6 in the Crystal Structure of A Pfam DUF849 Domain Containing Protein (REUT_A1631) From Ralstonia Eutropha JMP134 at 1.90 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of A Pfam DUF849 Domain Containing Protein (REUT_A1631) From Ralstonia Eutropha JMP134 at 1.90 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn275 b:22.8 occ:1.00 OE2 C:GLU229 2.1 17.0 1.0 NE2 C:HIS47 2.1 15.5 1.0 NE2 C:HIS49 2.1 19.8 1.0 O C:HOH936 2.2 12.5 1.0 OXT C:ACT286 2.3 29.0 1.0 O1 C:EDO276 2.9 36.5 1.0 CD2 C:HIS49 3.1 20.5 1.0 CD C:GLU229 3.1 25.7 1.0 CD2 C:HIS47 3.1 16.5 1.0 CE1 C:HIS47 3.1 15.4 1.0 CE1 C:HIS49 3.2 19.6 1.0 C C:ACT286 3.3 30.7 1.0 C1 C:EDO276 3.4 37.3 1.0 OE1 C:GLU229 3.4 15.4 1.0 O C:ACT286 3.6 31.3 1.0 O2 C:EDO281 4.0 44.9 1.0 OG C:SER83 4.0 20.2 1.0 NH2 C:ARG225 4.1 14.8 1.0 CG C:HIS47 4.2 16.0 1.0 CG C:HIS49 4.2 19.2 1.0 ND1 C:HIS47 4.2 17.1 1.0 ND1 C:HIS49 4.3 20.7 1.0 CB C:SER83 4.4 16.8 1.0 CG C:GLU229 4.4 20.5 1.0 NH1 C:ARG225 4.5 16.6 1.0 O C:HOH1031 4.6 39.5 1.0 C2 C:EDO276 4.6 37.2 1.0 CH3 C:ACT286 4.7 30.6 1.0 CZ C:ARG225 4.8 28.5 1.0

Zinc binding site 4 out of 6 in the Crystal Structure of A Pfam DUF849 Domain Containing Protein (REUT_A1631) From Ralstonia Eutropha JMP134 at 1.90 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of A Pfam DUF849 Domain Containing Protein (REUT_A1631) From Ralstonia Eutropha JMP134 at 1.90 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn275 b:22.1 occ:1.00 OE2 D:GLU229 2.1 14.0 1.0 NE2 D:HIS47 2.1 17.8 1.0 NE2 D:HIS49 2.2 16.8 1.0 O2 D:EDO277 2.2 22.0 1.0 O D:HOH606 2.2 21.9 1.0 OXT D:ACT287 2.6 37.0 1.0 CD D:GLU229 3.1 25.8 1.0 CD2 D:HIS49 3.1 17.4 1.0 CD2 D:HIS47 3.1 18.6 1.0 CE1 D:HIS47 3.1 17.5 1.0 CE1 D:HIS49 3.2 16.7 1.0 OE1 D:GLU229 3.4 16.9 1.0 C2 D:EDO277 3.5 22.9 1.0 C D:ACT287 3.8 38.1 1.0 C1 D:EDO277 3.8 26.3 1.0 O1 D:EDO277 3.9 29.2 1.0 OG D:SER83 4.0 14.4 1.0 NH2 D:ARG225 4.0 10.9 1.0 CG D:HIS47 4.2 17.1 1.0 ND1 D:HIS47 4.2 18.4 1.0 CG D:HIS49 4.2 16.3 1.0 ND1 D:HIS49 4.3 18.0 1.0 CB D:SER83 4.4 14.4 1.0 CG D:GLU229 4.4 17.3 1.0 O D:HOH653 4.4 36.5 1.0 CH3 D:ACT287 4.4 38.0 1.0 NH1 D:ARG225 4.4 14.1 1.0 C1 D:EDO284 4.7 36.1 1.0 CZ D:ARG225 4.7 23.2 1.0 O D:ACT287 4.8 37.4 1.0 O1 D:EDO284 4.8 37.6 1.0

Zinc binding site 5 out of 6 in the Crystal Structure of A Pfam DUF849 Domain Containing Protein (REUT_A1631) From Ralstonia Eutropha JMP134 at 1.90 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of A Pfam DUF849 Domain Containing Protein (REUT_A1631) From Ralstonia Eutropha JMP134 at 1.90 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ E:Zn275 b:21.9 occ:1.00 NE2 E:HIS47 2.1 16.5 1.0 OE2 E:GLU229 2.1 19.3 1.0 O E:HOH1043 2.1 20.0 1.0 NE2 E:HIS49 2.1 20.2 1.0 O E:HOH1156 2.6 31.6 1.0 O E:HOH667 2.7 24.1 1.0 CD2 E:HIS49 3.0 20.7 1.0 CD2 E:HIS47 3.1 16.5 1.0 CE1 E:HIS47 3.1 16.1 1.0 CD E:GLU229 3.1 29.7 1.0 CE1 E:HIS49 3.2 20.4 1.0 OE1 E:GLU229 3.4 18.0 1.0 OG E:SER83 3.9 25.9 1.0 NH2 E:ARG225 4.1 19.2 1.0 O E:HOH555 4.1 26.5 1.0 CG E:HIS47 4.2 15.3 1.0 ND1 E:HIS47 4.2 16.8 1.0 CG E:HIS49 4.2 20.0 1.0 ND1 E:HIS49 4.3 21.9 1.0 CB E:SER83 4.3 21.7 1.0 CG E:GLU229 4.4 23.4 1.0 NH1 E:ARG225 4.5 16.0 1.0 CZ E:ARG225 4.8 29.6 1.0 O E:HOH1064 5.0 28.7 1.0

Zinc binding site 6 out of 6 in the Crystal Structure of A Pfam DUF849 Domain Containing Protein (REUT_A1631) From Ralstonia Eutropha JMP134 at 1.90 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of A Pfam DUF849 Domain Containing Protein (REUT_A1631) From Ralstonia Eutropha JMP134 at 1.90 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ F:Zn275 b:24.5 occ:1.00 OE2 F:GLU229 2.1 22.1 1.0 NE2 F:HIS47 2.1 19.9 1.0 NE2 F:HIS49 2.1 20.6 1.0 O F:HOH1046 2.2 19.2 1.0 O F:HOH988 2.2 19.4 1.0 O F:HOH763 2.7 32.1 1.0 CD2 F:HIS49 3.1 21.5 1.0 CD F:GLU229 3.1 37.6 1.0 CD2 F:HIS47 3.1 20.7 1.0 CE1 F:HIS47 3.1 19.0 1.0 CE1 F:HIS49 3.2 20.4 1.0 OE1 F:GLU229 3.4 30.9 1.0 OG F:SER83 3.9 21.2 1.0 O F:HOH1030 4.0 31.5 1.0 NH2 F:ARG225 4.1 21.1 1.0 CG F:HIS47 4.2 19.0 1.0 CG F:HIS49 4.2 20.4 1.0 ND1 F:HIS47 4.2 19.9 1.0 ND1 F:HIS49 4.3 21.9 1.0 CB F:SER83 4.3 17.6 1.0 CG F:GLU229 4.4 24.9 1.0 NH1 F:ARG225 4.5 23.1 1.0 CZ F:ARG225 4.8 37.1 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.