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Zinc in PDB 4i10: Structure-Based Design of Novel Dihydroisoquinoline Bace-1 Inhibitors That Do Not Engage the Catalytic Aspartates

Enzymatic activity of Structure-Based Design of Novel Dihydroisoquinoline Bace-1 Inhibitors That Do Not Engage the Catalytic Aspartates

All present enzymatic activity of Structure-Based Design of Novel Dihydroisoquinoline Bace-1 Inhibitors That Do Not Engage the Catalytic Aspartates:
3.4.23.46;

Protein crystallography data

The structure of Structure-Based Design of Novel Dihydroisoquinoline Bace-1 Inhibitors That Do Not Engage the Catalytic Aspartates, PDB code: 4i10 was solved by J.C.Lougheed, E.Brecht, N.H.Yao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 60.86 / 2.07
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 75.090, 103.900, 99.720, 90.00, 90.00, 90.00
R / Rfree (%) 16.9 / 22.8

Other elements in 4i10:

The structure of Structure-Based Design of Novel Dihydroisoquinoline Bace-1 Inhibitors That Do Not Engage the Catalytic Aspartates also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure-Based Design of Novel Dihydroisoquinoline Bace-1 Inhibitors That Do Not Engage the Catalytic Aspartates (pdb code 4i10). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Structure-Based Design of Novel Dihydroisoquinoline Bace-1 Inhibitors That Do Not Engage the Catalytic Aspartates, PDB code: 4i10:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 4i10

Go back to Zinc Binding Sites List in 4i10
Zinc binding site 1 out of 3 in the Structure-Based Design of Novel Dihydroisoquinoline Bace-1 Inhibitors That Do Not Engage the Catalytic Aspartates


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure-Based Design of Novel Dihydroisoquinoline Bace-1 Inhibitors That Do Not Engage the Catalytic Aspartates within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:26.8
occ:1.00
NE2 A:HIS110 1.9 21.3 1.0
ND2 A:ASN175 2.7 36.9 1.0
CD2 A:HIS110 2.9 22.8 1.0
CE1 A:HIS110 3.0 23.0 1.0
CG A:ASN175 3.9 39.7 1.0
ND1 A:HIS110 4.1 22.0 1.0
CG A:HIS110 4.1 22.3 1.0
OD1 A:ASN175 4.5 37.4 1.0
O A:HOH666 5.0 18.6 1.0
CB A:ASN175 5.0 29.6 1.0

Zinc binding site 2 out of 3 in 4i10

Go back to Zinc Binding Sites List in 4i10
Zinc binding site 2 out of 3 in the Structure-Based Design of Novel Dihydroisoquinoline Bace-1 Inhibitors That Do Not Engage the Catalytic Aspartates


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure-Based Design of Novel Dihydroisoquinoline Bace-1 Inhibitors That Do Not Engage the Catalytic Aspartates within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn502

b:24.0
occ:1.00
NE2 A:HIS459 1.8 20.7 1.0
ND1 A:HIS457 2.0 20.9 1.0
CD2 A:HIS459 2.8 21.1 1.0
CE1 A:HIS459 2.8 20.0 1.0
CG A:HIS457 2.9 23.8 1.0
CE1 A:HIS457 3.0 21.2 1.0
CB A:HIS457 3.3 24.7 1.0
ND1 A:HIS459 4.0 20.1 1.0
CG A:HIS459 4.0 21.8 1.0
NE2 A:HIS457 4.1 24.4 1.0
CD2 A:HIS457 4.1 23.1 1.0
CA A:HIS457 4.8 25.2 1.0

Zinc binding site 3 out of 3 in 4i10

Go back to Zinc Binding Sites List in 4i10
Zinc binding site 3 out of 3 in the Structure-Based Design of Novel Dihydroisoquinoline Bace-1 Inhibitors That Do Not Engage the Catalytic Aspartates


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure-Based Design of Novel Dihydroisoquinoline Bace-1 Inhibitors That Do Not Engage the Catalytic Aspartates within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn503

b:48.9
occ:1.00
ND1 A:HIS458 1.9 38.2 1.0
O A:HOH829 2.1 31.9 1.0
OD1 A:ASP192 2.5 19.0 1.0
OD2 A:ASP192 2.5 26.6 1.0
CG A:ASP192 2.8 20.9 1.0
CE1 A:HIS458 2.9 40.4 1.0
CG A:HIS458 2.9 35.4 1.0
CB A:HIS458 3.4 29.9 1.0
CA A:HIS458 3.7 30.6 1.0
NE2 A:HIS458 4.0 41.2 1.0
CD2 A:HIS458 4.0 37.0 1.0
CB A:ASP192 4.3 17.6 1.0
O A:HIS457 4.4 30.0 1.0
C A:HIS458 4.6 28.9 1.0
N A:HIS458 4.7 29.8 1.0
C A:HIS457 5.0 28.2 1.0

Reference:

S.Bowers, Y.Z.Xu, S.Yuan, G.D.Probst, R.K.Hom, W.Chan, A.W.Konradi, H.L.Sham, Y.L.Zhu, P.Beroza, H.Pan, E.Brecht, N.Yao, J.Lougheed, D.Tam, Z.Ren, L.Ruslim, M.P.Bova, D.R.Artis. Structure-Based Design of Novel Dihydroisoquinoline Bace-1 Inhibitors That Do Not Engage the Catalytic Aspartates. Bioorg.Med.Chem.Lett. V. 23 2181 2013.
ISSN: ISSN 0960-894X
PubMed: 23465612
DOI: 10.1016/J.BMCL.2013.01.103
Page generated: Sun Oct 27 00:25:08 2024

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