Atomistry » Zinc » PDB 3n9n-3nih » 3nf3
Atomistry »
  Zinc »
    PDB 3n9n-3nih »
      3nf3 »

Zinc in PDB 3nf3: Crystal Structure of Bont/A Lc with Jth-Nb-7239 Peptide

Protein crystallography data

The structure of Crystal Structure of Bont/A Lc with Jth-Nb-7239 Peptide, PDB code: 3nf3 was solved by J.E.Zuniga, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.02 / 2.40
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 56.100, 189.600, 41.510, 90.00, 90.00, 90.00
R / Rfree (%) 18.3 / 23.1

Other elements in 3nf3:

The structure of Crystal Structure of Bont/A Lc with Jth-Nb-7239 Peptide also contains other interesting chemical elements:

Nickel (Ni) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Bont/A Lc with Jth-Nb-7239 Peptide (pdb code 3nf3). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Bont/A Lc with Jth-Nb-7239 Peptide, PDB code: 3nf3:

Zinc binding site 1 out of 1 in 3nf3

Go back to Zinc Binding Sites List in 3nf3
Zinc binding site 1 out of 1 in the Crystal Structure of Bont/A Lc with Jth-Nb-7239 Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Bont/A Lc with Jth-Nb-7239 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn600

b:31.9
occ:1.00
OE1 A:GLU262 2.2 28.2 1.0
NE2 A:HIS227 2.2 26.3 1.0
NE2 A:HIS223 2.2 29.0 1.0
N C:ARG1 2.3 29.8 1.0
OE2 A:GLU262 2.4 25.5 1.0
O C:ARG1 2.4 36.1 1.0
CD A:GLU262 2.6 32.4 1.0
CD2 A:HIS227 3.0 32.4 1.0
CD2 A:HIS223 3.0 23.1 1.0
C C:ARG1 3.1 35.4 1.0
CA C:ARG1 3.1 27.4 1.0
CE1 A:HIS223 3.3 25.4 1.0
CE1 A:HIS227 3.3 27.5 1.0
CB C:ARG1 3.7 32.2 1.0
OH A:TYR366 4.1 29.0 1.0
CG A:GLU262 4.1 26.1 1.0
OE2 A:GLU224 4.1 29.8 1.0
CG A:HIS227 4.2 28.4 1.0
CG A:HIS223 4.2 30.1 1.0
ND1 A:HIS227 4.3 41.5 1.0
ND1 A:HIS223 4.3 27.7 1.0
N C:ARG2 4.3 40.9 1.0
O A:HOH510 4.5 26.4 1.0
CE2 A:TYR366 4.6 27.3 1.0
O A:HOH487 4.7 47.0 1.0
CZ A:TYR366 4.7 35.8 1.0
CG C:ARG1 4.8 42.5 1.0
CB A:GLU262 4.8 25.7 1.0
CD A:GLU224 4.9 28.4 1.0
CG2 A:THR265 4.9 25.1 1.0
OE1 A:GLU224 5.0 24.8 1.0

Reference:

J.E.Zuniga, J.T.Hammill, O.Drory, J.E.Nuss, J.C.Burnett, R.Gussio, P.Wipf, S.Bavari, A.T.Brunger. Iterative Structure-Based Peptide-Like Inhibitor Design Against the Botulinum Neurotoxin Serotype A. Plos One V. 5 E1137 2010.
ISSN: ESSN 1932-6203
PubMed: 20614028
DOI: 10.1371/JOURNAL.PONE.0011378
Page generated: Sat Oct 26 10:12:53 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy