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Zinc in PDB 3n0n: Crystal Structure of Human Carbonic Anhydrase II in Complex with A Benzenesulfonamide Inhibitor

Enzymatic activity of Crystal Structure of Human Carbonic Anhydrase II in Complex with A Benzenesulfonamide Inhibitor

All present enzymatic activity of Crystal Structure of Human Carbonic Anhydrase II in Complex with A Benzenesulfonamide Inhibitor:
4.2.1.1;

Protein crystallography data

The structure of Crystal Structure of Human Carbonic Anhydrase II in Complex with A Benzenesulfonamide Inhibitor, PDB code: 3n0n was solved by B.S.Avvaru, J.Wagner, A.H.Robbins, R.Mckenna, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.97 / 1.50
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 42.359, 41.448, 71.961, 90.00, 104.24, 90.00
R / Rfree (%) 14 / 17.1

Other elements in 3n0n:

The structure of Crystal Structure of Human Carbonic Anhydrase II in Complex with A Benzenesulfonamide Inhibitor also contains other interesting chemical elements:

Fluorine (F) 10 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Human Carbonic Anhydrase II in Complex with A Benzenesulfonamide Inhibitor (pdb code 3n0n). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Human Carbonic Anhydrase II in Complex with A Benzenesulfonamide Inhibitor, PDB code: 3n0n:

Zinc binding site 1 out of 1 in 3n0n

Go back to Zinc Binding Sites List in 3n0n
Zinc binding site 1 out of 1 in the Crystal Structure of Human Carbonic Anhydrase II in Complex with A Benzenesulfonamide Inhibitor


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Human Carbonic Anhydrase II in Complex with A Benzenesulfonamide Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn262

b:9.1
occ:1.00
 HN1 A:P9B263 1.6 9.1 0.6
HN1 A:P9B263 1.9 9.4 0.4
N1 A:P9B263 1.9 7.5 0.6
NE2 A:HIS94 2.0 7.6 1.0
NE2 A:HIS96 2.0 7.5 1.0
N1 A:P9B263 2.1 7.8 0.4
ND1 A:HIS119 2.1 8.0 1.0
CE1 A:HIS119 2.9 7.2 1.0
CD2 A:HIS94 3.0 8.1 1.0
S1 A:P9B263 3.0 8.0 0.6
O2 A:P9B263 3.0 8.6 0.6
CD2 A:HIS96 3.0 8.6 1.0
HE1 A:HIS119 3.0 8.6 1.0
CE1 A:HIS96 3.0 8.8 1.0
CE1 A:HIS94 3.1 7.8 1.0
S1 A:P9B263 3.1 8.4 0.4
O2 A:P9B263 3.1 8.0 0.4
HD2 A:HIS94 3.2 9.7 1.0
CG A:HIS119 3.2 7.8 1.0
HD2 A:HIS96 3.2 10.4 1.0
HB2 A:HIS119 3.2 8.1 1.0
HE1 A:HIS96 3.2 10.6 1.0
HE1 A:HIS94 3.3 9.3 1.0
HG1 A:THR199 3.6 9.8 1.0
CB A:HIS119 3.6 6.7 1.0
HB3 A:HIS119 3.7 8.1 1.0
OG1 A:THR199 4.0 8.2 1.0
OE1 A:GLU106 4.0 9.3 1.0
O1 A:P9B263 4.0 8.6 0.6
NE2 A:HIS119 4.1 7.6 1.0
ND1 A:HIS94 4.1 7.2 1.0
CG A:HIS94 4.2 8.8 1.0
C1 A:P9B263 4.2 8.0 0.6
ND1 A:HIS96 4.2 9.6 1.0
C1 A:P9B263 4.2 9.6 0.4
CG A:HIS96 4.2 8.9 1.0
O1 A:P9B263 4.2 8.7 0.4
HH2 A:TRP209 4.2 9.6 1.0
CD2 A:HIS119 4.2 7.4 1.0
C3 A:GOL401 4.4 12.2 1.0
H2 A:P9B263 4.6 13.1 0.4
H2 A:P9B263 4.7 10.0 0.6
C2 A:P9B263 4.7 10.9 0.4
C2 A:P9B263 4.9 8.4 0.6
HE2 A:HIS119 4.9 9.1 1.0
H6 A:P9B263 4.9 10.7 0.6
HG23 A:THR200 4.9 12.8 1.0
C6 A:P9B263 4.9 8.9 0.6
HD1 A:HIS94 4.9 8.6 1.0
HG11 A:VAL143 4.9 10.3 1.0
HD1 A:HIS96 4.9 11.5 1.0
CD A:GLU106 4.9 10.2 1.0
C6 A:P9B263 5.0 10.7 0.4

Reference:

F.Pacchiano, M.Aggarwal, B.S.Avvaru, A.H.Robbins, A.Scozzafava, R.Mckenna, C.T.Supuran. Selective Hydrophobic Pocket Binding Observed Within the Carbonic Anhydrase II Active Site Accommodate Different 4-Substituted-Ureido-Benzenesulfonamides and Correlate to Inhibitor Potency. Chem.Commun.(Camb.) V. 46 8371 2010.
ISSN: ISSN 1359-7345
PubMed: 20922253
DOI: 10.1039/C0CC02707C
Page generated: Wed Dec 16 04:36:26 2020

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