Zinc in PDB 3m4r: Structure of the N-Terminal Class II Aldolase Domain of A Conserved Protein From Thermoplasma Acidophilum

The structure of Structure of the N-Terminal Class II Aldolase Domain of A Conserved Protein From Thermoplasma Acidophilum, PDB code: 3m4r was solved by M.E.Cuff, H.Li, S.Clancy, A.Joachimiak, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.89 / 2.00
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	46.136, 46.136, 203.998, 90.00, 90.00, 120.00
R / Rfree (%)	18.6 / 23.3

The structure of Structure of the N-Terminal Class II Aldolase Domain of A Conserved Protein From Thermoplasma Acidophilum also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Zinc atom in the Structure of the N-Terminal Class II Aldolase Domain of A Conserved Protein From Thermoplasma Acidophilum (pdb code 3m4r). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of the N-Terminal Class II Aldolase Domain of A Conserved Protein From Thermoplasma Acidophilum, PDB code: 3m4r:

Zinc binding site 1 out of 1 in the Structure of the N-Terminal Class II Aldolase Domain of A Conserved Protein From Thermoplasma Acidophilum


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the N-Terminal Class II Aldolase Domain of A Conserved Protein From Thermoplasma Acidophilum within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn220 b:37.4 occ:1.00 NE2 A:HIS185 2.0 28.3 1.0 O A:HOH362 2.0 21.6 1.0 NE2 A:HIS129 2.1 27.2 1.0 NE2 A:HIS127 2.2 21.7 1.0 OE1 A:GLU113 2.3 25.7 1.0 OE2 A:GLU113 2.3 26.0 1.0 CD A:GLU113 2.6 26.5 1.0 CE1 A:HIS185 2.9 31.1 1.0 CD2 A:HIS185 3.0 28.9 1.0 CD2 A:HIS127 3.1 23.8 1.0 CE1 A:HIS129 3.1 31.1 1.0 CD2 A:HIS129 3.1 25.6 1.0 CE1 A:HIS127 3.3 26.6 1.0 ND1 A:HIS185 4.0 25.1 1.0 CG A:GLU113 4.1 24.1 1.0 CG A:HIS185 4.1 26.8 1.0 O A:HOH323 4.1 40.5 1.0 O A:HOH285 4.2 32.5 1.0 ND1 A:HIS129 4.2 28.8 1.0 CG A:HIS127 4.2 24.6 1.0 CG A:HIS129 4.3 27.9 1.0 ND1 A:HIS127 4.3 24.8 1.0 O A:HOH259 4.6 36.3 1.0 CD1 A:LEU116 4.8 25.1 1.0 CB A:GLU113 5.0 23.4 1.0 ND2 A:ASN37 5.0 22.3 1.0 O A:HOH240 5.0 22.3 1.0

M.E.Cuff, H.Li, S.Clancy, A.Joachimiak. Structure of the N-Terminal Class II Aldolase Domain of A Conserved Protein From Thermoplasma Acidophilum To Be Published.