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Zinc in PDB 3lot: Crystal Structure of Protein of Unknown Function (NP_070038.1) From Archaeoglobus Fulgidus at 1.89 A Resolution

Protein crystallography data

The structure of Crystal Structure of Protein of Unknown Function (NP_070038.1) From Archaeoglobus Fulgidus at 1.89 A Resolution, PDB code: 3lot was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.97 / 1.89
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 75.786, 103.079, 156.550, 90.00, 90.00, 90.00
R / Rfree (%) 15.6 / 20.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Protein of Unknown Function (NP_070038.1) From Archaeoglobus Fulgidus at 1.89 A Resolution (pdb code 3lot). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structure of Protein of Unknown Function (NP_070038.1) From Archaeoglobus Fulgidus at 1.89 A Resolution, PDB code: 3lot:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 3lot

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Zinc binding site 1 out of 4 in the Crystal Structure of Protein of Unknown Function (NP_070038.1) From Archaeoglobus Fulgidus at 1.89 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Protein of Unknown Function (NP_070038.1) From Archaeoglobus Fulgidus at 1.89 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:36.0
occ:1.00
NE2 A:HIS51 2.3 13.7 1.0
NE2 A:HIS49 2.3 21.0 1.0
O5 A:UNL502 2.3 24.6 1.0
OE2 A:GLU261 2.3 16.5 1.0
O3 A:UNL502 2.4 14.9 1.0
CD2 A:HIS49 3.0 18.8 1.0
CD2 A:HIS51 3.1 14.0 1.0
O2 A:UNL504 3.2 32.6 1.0
O2 A:UNL502 3.2 26.3 1.0
CD A:GLU261 3.2 12.4 1.0
O4 A:UNL502 3.3 42.8 1.0
CE1 A:HIS51 3.3 14.0 1.0
CE1 A:HIS49 3.3 23.4 1.0
OE1 A:GLU261 3.4 12.8 1.0
OG1 A:THR85 4.1 11.1 1.0
NH2 A:ARG257 4.1 14.2 1.0
O4 A:UNL503 4.1 29.9 1.0
NH1 A:ARG257 4.1 14.3 1.0
O A:HOH377 4.2 14.8 1.0
CG A:HIS49 4.2 16.4 1.0
CG A:HIS51 4.3 12.2 1.0
ND1 A:HIS49 4.3 19.5 1.0
ND1 A:HIS51 4.4 14.3 1.0
O1 A:UNL502 4.4 11.3 1.0
O3 A:UNL503 4.5 31.1 1.0
CB A:THR85 4.5 11.4 1.0
CZ A:ARG257 4.5 13.9 1.0
CG A:GLU261 4.6 10.2 1.0
CA A:GLY15 5.0 10.8 1.0

Zinc binding site 2 out of 4 in 3lot

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Zinc binding site 2 out of 4 in the Crystal Structure of Protein of Unknown Function (NP_070038.1) From Archaeoglobus Fulgidus at 1.89 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Protein of Unknown Function (NP_070038.1) From Archaeoglobus Fulgidus at 1.89 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn501

b:34.1
occ:1.00
OE2 B:GLU261 2.2 17.3 1.0
NE2 B:HIS51 2.3 14.3 1.0
NE2 B:HIS49 2.4 23.0 1.0
O3 B:UNL502 2.4 14.2 1.0
O5 B:UNL502 2.6 24.3 1.0
O1 B:UNL503 2.7 25.5 1.0
CD B:GLU261 3.0 16.9 1.0
O2 B:UNL502 3.1 39.1 1.0
CD2 B:HIS51 3.2 13.5 1.0
OE1 B:GLU261 3.2 18.1 1.0
CD2 B:HIS49 3.2 20.8 1.0
CE1 B:HIS51 3.3 14.5 1.0
CE1 B:HIS49 3.4 21.8 1.0
O B:HOH348 4.1 19.0 1.0
NH2 B:ARG257 4.1 13.6 1.0
O4 B:UNL502 4.1 49.0 1.0
OG1 B:THR85 4.1 12.3 1.0
O1 B:UNL502 4.3 10.9 1.0
NH1 B:ARG257 4.3 16.9 1.0
O B:HOH1142 4.3 34.9 1.0
CG B:HIS51 4.4 12.5 1.0
CG B:HIS49 4.4 17.9 1.0
ND1 B:HIS51 4.4 12.6 1.0
CG B:GLU261 4.4 14.7 1.0
ND1 B:HIS49 4.4 22.0 1.0
O2 B:UNL503 4.5 30.1 1.0
CB B:THR85 4.6 12.1 1.0
CZ B:ARG257 4.6 16.6 1.0
CA B:GLY15 4.8 11.8 1.0

Zinc binding site 3 out of 4 in 3lot

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Zinc binding site 3 out of 4 in the Crystal Structure of Protein of Unknown Function (NP_070038.1) From Archaeoglobus Fulgidus at 1.89 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Protein of Unknown Function (NP_070038.1) From Archaeoglobus Fulgidus at 1.89 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn501

b:36.2
occ:1.00
OE2 C:GLU261 2.3 17.9 1.0
NE2 C:HIS51 2.4 10.9 1.0
O3 C:UNL502 2.4 11.8 1.0
O4 C:UNL502 2.4 21.3 1.0
NE2 C:HIS49 2.5 16.0 1.0
O2 C:UNL503 3.0 34.7 1.0
CD C:GLU261 3.1 15.3 1.0
CD2 C:HIS49 3.1 16.9 1.0
CD2 C:HIS51 3.2 10.9 1.0
OE1 C:GLU261 3.3 18.2 1.0
O2 C:UNL502 3.4 35.0 1.0
CE1 C:HIS51 3.4 14.9 1.0
CE1 C:HIS49 3.6 17.9 1.0
O C:HOH317 4.0 18.2 1.0
NH2 C:ARG257 4.0 17.8 1.0
OG1 C:THR85 4.1 11.5 1.0
NH1 C:ARG257 4.2 17.5 1.0
O1 C:UNL502 4.3 14.6 1.0
CG C:HIS51 4.4 13.9 1.0
O1 C:UNL503 4.4 33.3 1.0
CG C:HIS49 4.4 16.4 1.0
ND1 C:HIS51 4.5 13.5 1.0
CB C:THR85 4.5 10.9 1.0
CG C:GLU261 4.5 14.3 1.0
O5 C:UNL503 4.5 47.3 1.0
CZ C:ARG257 4.6 17.6 1.0
ND1 C:HIS49 4.6 15.6 1.0
O3 C:UNL503 4.8 35.3 1.0
CA C:GLY15 4.9 13.1 1.0
O4 C:UNL503 4.9 20.2 1.0

Zinc binding site 4 out of 4 in 3lot

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Zinc binding site 4 out of 4 in the Crystal Structure of Protein of Unknown Function (NP_070038.1) From Archaeoglobus Fulgidus at 1.89 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Protein of Unknown Function (NP_070038.1) From Archaeoglobus Fulgidus at 1.89 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn501

b:43.3
occ:1.00
OE2 D:GLU261 2.1 17.3 1.0
NE2 D:HIS51 2.3 15.7 1.0
NE2 D:HIS49 2.4 14.5 1.0
O2 D:UNL502 2.6 16.1 1.0
O D:HOH558 2.7 23.5 1.0
O D:HOH1326 2.8 39.4 1.0
CD D:GLU261 3.0 16.9 1.0
CD2 D:HIS49 3.0 14.4 1.0
OE1 D:GLU261 3.3 14.3 1.0
CD2 D:HIS51 3.3 15.6 1.0
CE1 D:HIS51 3.3 14.5 1.0
CE1 D:HIS49 3.6 18.8 1.0
NH2 D:ARG257 4.0 15.3 1.0
OG1 D:THR85 4.2 13.3 1.0
O D:HOH496 4.2 22.1 1.0
NH1 D:ARG257 4.3 18.9 1.0
O D:HOH1188 4.3 35.8 1.0
CG D:HIS49 4.3 13.8 1.0
O1 D:UNL502 4.4 19.3 1.0
CG D:GLU261 4.4 14.2 1.0
ND1 D:HIS51 4.4 14.8 1.0
CG D:HIS51 4.4 15.6 1.0
CB D:THR85 4.4 13.9 1.0
CZ D:ARG257 4.6 16.0 1.0
ND1 D:HIS49 4.6 17.1 1.0
OE2 D:GLU173 4.6 14.2 0.4
CA D:GLY15 4.9 11.6 1.0
OE1 D:GLU173 4.9 15.9 0.4
O D:HOH585 5.0 23.9 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Wed Dec 16 04:32:42 2020

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