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Zinc in PDB 3ksl: Structure of Fpt Bound to Datfp-Dh-Gpp

Enzymatic activity of Structure of Fpt Bound to Datfp-Dh-Gpp

All present enzymatic activity of Structure of Fpt Bound to Datfp-Dh-Gpp:
2.5.1.58;

Protein crystallography data

The structure of Structure of Fpt Bound to Datfp-Dh-Gpp, PDB code: 3ksl was solved by M.L.Hovlid, R.L.Edelstein, O.Henry, J.Ochocki, A.Degraw, S.Lenevich, T.Talbot, V.Young, A.W.Hruza, F.Lopez-Gallego, N.P.Labello, C.L.Strickland, C.Schmidt-Dannert, M.D.Distefano, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.45 / 2.05
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 171.191, 171.191, 69.217, 90.00, 90.00, 120.00
R / Rfree (%) 18 / 21.4

Other elements in 3ksl:

The structure of Structure of Fpt Bound to Datfp-Dh-Gpp also contains other interesting chemical elements:

Fluorine (F) 6 atoms
Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Fpt Bound to Datfp-Dh-Gpp (pdb code 3ksl). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of Fpt Bound to Datfp-Dh-Gpp, PDB code: 3ksl:

Zinc binding site 1 out of 1 in 3ksl

Go back to Zinc Binding Sites List in 3ksl
Zinc binding site 1 out of 1 in the Structure of Fpt Bound to Datfp-Dh-Gpp


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Fpt Bound to Datfp-Dh-Gpp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn2001

b:36.0
occ:1.00
OD2 B:ASP297 2.1 27.3 1.0
NE2 B:HIS362 2.2 27.5 1.0
O B:HOH630 2.3 33.2 1.0
SG B:CYS299 2.4 26.4 1.0
OD1 B:ASP297 2.4 24.6 1.0
CG B:ASP297 2.5 24.6 1.0
CE1 B:HIS362 3.1 27.1 1.0
CD2 B:HIS362 3.2 27.4 1.0
CB B:CYS299 3.3 22.5 1.0
CE2 B:TYR361 3.8 27.3 1.0
CB B:ASP297 4.0 24.2 1.0
N B:CYS299 4.0 22.0 1.0
CA B:CYS299 4.2 21.6 1.0
ND1 B:HIS362 4.2 27.8 1.0
CG B:HIS362 4.3 26.2 1.0
O B:HOH536 4.4 34.3 1.0
CB B:ASP352 4.4 25.4 1.0
OH B:TYR361 4.5 32.1 1.0
CG B:ASP352 4.6 31.2 1.0
CZ B:TYR361 4.7 32.0 1.0
CD2 B:TYR361 4.7 26.3 1.0
CA B:ASP352 4.9 24.4 1.0
OD2 B:ASP352 4.9 37.3 1.0

Reference:

M.L.Hovlid, R.L.Edelstein, O.Henry, J.Ochocki, A.Degraw, S.Lenevich, T.Talbot, V.G.Young, A.W.Hruza, F.Lopez-Gallego, N.P.Labello, C.L.Strickland, C.Schmidt-Dannert, M.D.Distefano. Synthesis, Properties, and Applications of Diazotrifluropropanoyl-Containing Photoactive Analogs of Farnesyl Diphosphate Containing Modified Linkages For Enhanced Stability. Chem.Biol.Drug Des. V. 75 51 2010.
ISSN: ISSN 1747-0277
PubMed: 19954434
DOI: 10.1111/J.1747-0285.2009.00914.X
Page generated: Wed Dec 16 04:31:05 2020

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