Zinc in PDB 3krv: The Structure of Potential Metal-Dependent Hydrolase with Cyclase Activity

The structure of The Structure of Potential Metal-Dependent Hydrolase with Cyclase Activity, PDB code: 3krv was solved by N.Rakonjac, P.Rezacova, D.Borek, F.Collart, A.Joachimiak, Z.Otwinowski, Midwest Center For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.88 / 2.55
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	119.096, 119.096, 124.413, 90.00, 90.00, 90.00
R / Rfree (%)	19.3 / 24.4

The structure of The Structure of Potential Metal-Dependent Hydrolase with Cyclase Activity also contains other interesting chemical elements:

Chlorine

(Cl)

8 atoms

The binding sites of Zinc atom in the The Structure of Potential Metal-Dependent Hydrolase with Cyclase Activity (pdb code 3krv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the The Structure of Potential Metal-Dependent Hydrolase with Cyclase Activity, PDB code: 3krv:

Zinc binding site 1 out of 1 in the The Structure of Potential Metal-Dependent Hydrolase with Cyclase Activity


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Structure of Potential Metal-Dependent Hydrolase with Cyclase Activity within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn206 b:60.7 occ:0.80 NE2 B:HIS49 2.1 30.0 1.0 OD1 B:ASP51 2.2 31.8 1.0 OE1 B:GLU167 2.3 33.9 1.0 ND1 B:HIS45 2.3 22.5 1.0 O B:HOH253 2.9 50.1 1.0 CD2 B:HIS49 2.9 27.1 1.0 CG B:ASP51 3.1 29.7 1.0 CE1 B:HIS49 3.2 24.2 1.0 CE1 B:HIS45 3.3 22.5 1.0 OD2 B:ASP51 3.3 32.3 1.0 CG B:HIS45 3.4 23.4 1.0 CD B:GLU167 3.4 29.1 1.0 CB B:HIS45 3.7 20.9 1.0 OE2 B:GLU167 4.0 30.9 1.0 CG B:HIS49 4.1 27.6 1.0 ND1 B:HIS49 4.2 27.8 1.0 NE2 B:HIS55 4.3 29.1 1.0 NE2 B:HIS45 4.4 22.5 1.0 CA B:HIS45 4.4 21.6 1.0 CD2 B:HIS45 4.5 22.8 1.0 CD2 B:HIS55 4.5 27.6 1.0 O B:LEU143 4.5 28.2 1.0 CB B:ASP51 4.5 27.2 1.0 CG B:GLU167 4.6 26.2 1.0 CB B:GLU167 4.7 24.3 1.0 CA B:ASP51 4.9 27.4 1.0 CB B:ALA193 5.0 28.6 1.0

P.Rezacova, N.Rakonjac, J.Maderova, D.Borek, D.Tomchick, A.Joachimiak, F.Collart, Z.Otwinowski. The Structure of Potential Metal-Dependent Hydrolase with Cyclase Activity To Be Published.