Atomistry » Zinc » PDB 3kej-3kr5 » 3kfl
Atomistry »
  Zinc »
    PDB 3kej-3kr5 »
      3kfl »

Zinc in PDB 3kfl: Leishmania Major Methionyl-Trna Synthetase in Complex with Methionyladenylate and Pyrophosphate

Enzymatic activity of Leishmania Major Methionyl-Trna Synthetase in Complex with Methionyladenylate and Pyrophosphate

All present enzymatic activity of Leishmania Major Methionyl-Trna Synthetase in Complex with Methionyladenylate and Pyrophosphate:
6.1.1.10;

Protein crystallography data

The structure of Leishmania Major Methionyl-Trna Synthetase in Complex with Methionyladenylate and Pyrophosphate, PDB code: 3kfl was solved by E.T.Larson, E.A.Merritt, Medical Structural Genomics Of Pathogenicprotozoa (Msgpp), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.16 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 68.816, 88.802, 101.779, 90.00, 90.00, 90.00
R / Rfree (%) 16.8 / 20.9

Other elements in 3kfl:

The structure of Leishmania Major Methionyl-Trna Synthetase in Complex with Methionyladenylate and Pyrophosphate also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Leishmania Major Methionyl-Trna Synthetase in Complex with Methionyladenylate and Pyrophosphate (pdb code 3kfl). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Leishmania Major Methionyl-Trna Synthetase in Complex with Methionyladenylate and Pyrophosphate, PDB code: 3kfl:

Zinc binding site 1 out of 1 in 3kfl

Go back to Zinc Binding Sites List in 3kfl
Zinc binding site 1 out of 1 in the Leishmania Major Methionyl-Trna Synthetase in Complex with Methionyladenylate and Pyrophosphate


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Leishmania Major Methionyl-Trna Synthetase in Complex with Methionyladenylate and Pyrophosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn804

b:72.6
occ:1.00
 NE2 A:HIS258 2.2 32.4 1.0
OE2 A:GLU307 2.4 39.8 1.0
O A:HOH1211 2.4 39.9 1.0
O A:HOH1212 2.5 46.4 1.0
CD2 A:HIS258 3.0 33.2 1.0
CE1 A:HIS258 3.2 29.8 1.0
CD A:GLU307 3.4 36.9 1.0
OE1 A:GLU307 3.8 40.0 1.0
CG2 A:THR302 4.1 33.8 1.0
CG A:HIS258 4.1 26.9 1.0
ND1 A:HIS258 4.2 28.6 1.0
CA A:THR302 4.6 34.0 1.0
CG A:GLU307 4.6 33.0 1.0
C A:SER429 4.7 29.5 1.0
CB A:THR302 4.7 35.5 1.0
O A:SER429 4.8 30.0 1.0
CZ3 A:TRP428 4.8 42.0 1.0
CH2 A:TRP428 4.9 42.2 1.0
CG1 A:ILE430 4.9 30.8 1.0
N A:ILE430 4.9 27.6 1.0

Reference:

E.T.Larson, J.E.Kim, F.H.Zucker, A.Kelley, N.Mueller, A.J.Napuli, C.L.Verlinde, E.Fan, F.S.Buckner, W.C.Van Voorhis, E.A.Merritt, W.G.Hol. Structure of Leishmania Major Methionyl-Trna Synthetase in Complex with Intermediate Products Methionyladenylate and Pyrophosphate. Biochimie V. 93 570 2011.
ISSN: ISSN 0300-9084
PubMed: 21144880
DOI: 10.1016/J.BIOCHI.2010.11.015
Page generated: Sat Oct 26 07:49:10 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy